Literature DB >> 21108865

Structures of ribonucleoprotein particle modification enzymes.

Bo Liang1, Hong Li.   

Abstract

Small nucleolar and Cajal body ribonucleoprotein particles (RNPs) are required for the maturation of ribosomes and spliceosomes. They consist of small nucleolar RNA or Cajal body RNA combined with partner proteins and represent the most complex RNA modification enzymes. Recent advances in structure and function studies have revealed detailed information regarding ribonucleoprotein assembly and substrate binding. These enzymes form intertwined RNA-protein assemblies that facilitate reversible binding of the large ribosomal RNA or small nuclear RNA. These revelations explain the specificity among the components in enzyme assembly and substrate modification. The multiple conformations of individual components and those of complete RNPs suggest a dynamic assembly process and justify the requirement of many assembly factors in vivo.

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Year:  2010        PMID: 21108865      PMCID: PMC5193010          DOI: 10.1017/S0033583510000235

Source DB:  PubMed          Journal:  Q Rev Biophys        ISSN: 0033-5835            Impact factor:   5.318


  152 in total

1.  Structure and function of archaeal box C/D sRNP core proteins.

Authors:  Mohamed Aittaleb; Rumana Rashid; Qiong Chen; John R Palmer; Charles J Daniels; Hong Li
Journal:  Nat Struct Biol       Date:  2003-04

2.  Crystal structure of pseudouridine synthase RluA: indirect sequence readout through protein-induced RNA structure.

Authors:  Charmaine Hoang; Junjun Chen; Caroline A Vizthum; Jason M Kandel; Christopher S Hamilton; Eugene G Mueller; Adrian R Ferré-D'Amaré
Journal:  Mol Cell       Date:  2006-11-17       Impact factor: 17.970

3.  Crystal structure of human Pus10, a novel pseudouridine synthase.

Authors:  Clare J McCleverty; Michael Hornsby; Glen Spraggon; Andreas Kreusch
Journal:  J Mol Biol       Date:  2007-08-29       Impact factor: 5.469

4.  Loss of rRNA modifications in the decoding center of the ribosome impairs translation and strongly delays pre-rRNA processing.

Authors:  Xue-Hai Liang; Qing Liu; Maurille J Fournier
Journal:  RNA       Date:  2009-07-23       Impact factor: 4.942

5.  Modifications of U2 snRNA are required for snRNP assembly and pre-mRNA splicing.

Authors:  Y T Yu; M D Shu; J A Steitz
Journal:  EMBO J       Date:  1998-10-01       Impact factor: 11.598

6.  Synthesis and assembly of the box C+D small nucleolar RNPs.

Authors:  D L Lafontaine; D Tollervey
Journal:  Mol Cell Biol       Date:  2000-04       Impact factor: 4.272

7.  U14 base-pairs with 18S rRNA: a novel snoRNA interaction required for rRNA processing.

Authors:  W Q Liang; M J Fournier
Journal:  Genes Dev       Date:  1995-10-01       Impact factor: 11.361

8.  The box H + ACA snoRNAs carry Cbf5p, the putative rRNA pseudouridine synthase.

Authors:  D L Lafontaine; C Bousquet-Antonelli; Y Henry; M Caizergues-Ferrer; D Tollervey
Journal:  Genes Dev       Date:  1998-02-15       Impact factor: 11.361

9.  A well-connected and conserved nucleoplasmic helicase is required for production of box C/D and H/ACA snoRNAs and localization of snoRNP proteins.

Authors:  T H King; W A Decatur; E Bertrand; E S Maxwell; M J Fournier
Journal:  Mol Cell Biol       Date:  2001-11       Impact factor: 4.272

10.  The box H/ACA RNP assembly factor Naf1p contains a domain homologous to Gar1p mediating its interaction with Cbf5p.

Authors:  Nicolas Leulliot; Katherine S Godin; Coralie Hoareau-Aveilla; Sophie Quevillon-Cheruel; Gabriele Varani; Yves Henry; Herman Van Tilbeurgh
Journal:  J Mol Biol       Date:  2007-06-16       Impact factor: 5.469

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  14 in total

1.  Box C/D guide RNAs recognize a maximum of 10 nt of substrates.

Authors:  Zuxiao Yang; Jinzhong Lin; Keqiong Ye
Journal:  Proc Natl Acad Sci U S A       Date:  2016-09-13       Impact factor: 11.205

Review 2.  RNA-guided isomerization of uridine to pseudouridine--pseudouridylation.

Authors:  Yi-Tao Yu; U Thomas Meier
Journal:  RNA Biol       Date:  2014       Impact factor: 4.652

3.  Accurate placement of substrate RNA by Gar1 in H/ACA RNA-guided pseudouridylation.

Authors:  Peng Wang; Lijiang Yang; Yi Qin Gao; Xin Sheng Zhao
Journal:  Nucleic Acids Res       Date:  2015-07-22       Impact factor: 16.971

4.  rRNA pseudouridylation defects affect ribosomal ligand binding and translational fidelity from yeast to human cells.

Authors:  Karen Jack; Cristian Bellodi; Dori M Landry; Rachel O Niederer; Arturas Meskauskas; Sharmishtha Musalgaonkar; Noam Kopmar; Olya Krasnykh; Alison M Dean; Sunnie R Thompson; Davide Ruggero; Jonathan D Dinman
Journal:  Mol Cell       Date:  2011-11-18       Impact factor: 17.970

5.  CryoEM structures of pseudouridine-free ribosome suggest impacts of chemical modifications on ribosome conformations.

Authors:  Yu Zhao; Jay Rai; Hongguo Yu; Hong Li
Journal:  Structure       Date:  2022-04-29       Impact factor: 5.871

Review 6.  Biology and clinical relevance of noncoding sno/scaRNAs.

Authors:  Thuy Cao; Sheeja Rajasingh; Saheli Samanta; Buddhadeb Dawn; Douglas C Bittel; Johnson Rajasingh
Journal:  Trends Cardiovasc Med       Date:  2017-08-12       Impact factor: 6.677

7.  Kinetic and thermodynamic characterization of the reaction pathway of box H/ACA RNA-guided pseudouridine formation.

Authors:  Xinxing Yang; Jingqi Duan; Shuang Li; Peng Wang; Shoucai Ma; Keqiong Ye; Xin Sheng Zhao
Journal:  Nucleic Acids Res       Date:  2012-09-24       Impact factor: 16.971

8.  Targeting vertebrate intron-encoded box C/D 2'-O-methylation guide RNAs into the Cajal body.

Authors:  Aline Marnef; Patrica Richard; Natalia Pinzón; Tamás Kiss
Journal:  Nucleic Acids Res       Date:  2014-04-20       Impact factor: 16.971

9.  Proteomic and 3D structure analyses highlight the C/D box snoRNP assembly mechanism and its control.

Authors:  Jonathan Bizarro; Christophe Charron; Séverine Boulon; Belinda Westman; Bérengère Pradet-Balade; Franck Vandermoere; Marie-Eve Chagot; Marie Hallais; Yasmeen Ahmad; Heinrich Leonhardt; Angus Lamond; Xavier Manival; Christiane Branlant; Bruno Charpentier; Céline Verheggen; Edouard Bertrand
Journal:  J Cell Biol       Date:  2014-11-17       Impact factor: 10.539

10.  The dyskerin ribonucleoprotein complex as an OCT4/SOX2 coactivator in embryonic stem cells.

Authors:  Yick W Fong; Jaclyn J Ho; Carla Inouye; Robert Tjian
Journal:  Elife       Date:  2014-11-19       Impact factor: 8.140

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