Literature DB >> 18726094

Transport at the nanoscale: temperature dependence of ion conductance.

Catalin Chimerel1, Liviu Movileanu, Soroosh Pezeshki, Mathias Winterhalter, Ulrich Kleinekathöfer.   

Abstract

Temperature dependent ion conductance in nanopores is measured in a wide range of electrolyte concentrations and compared with molecular modeling. Single outer membrane protein F (OmpF) channels from E. coli are reconstituted into planar lipid bilayers. In qualitative agreement with the experimental data, applied-field molecular dynamics unraveled atomistic details of the ion transport. Comparing the temperature dependence of the channel conductance with that of the bulk conductivity in the range from 0 to 90 degrees C revealed that at low salt concentrations the transport is mainly driven along the pore surface. Increasing the salt concentration saturates the surface charge transport and induces ion transport in the center of the nanopore. The confinement of the nanopore then favors the formation of ion pairs. Stepping up the temperature reduces the life time of the ion pairs and increases the channel conductance more than expected from the bulk behavior.

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Year:  2008        PMID: 18726094     DOI: 10.1007/s00249-008-0366-0

Source DB:  PubMed          Journal:  Eur Biophys J        ISSN: 0175-7571            Impact factor:   1.733


  26 in total

1.  Role of charged residues at the OmpF porin channel constriction probed by mutagenesis and simulation.

Authors:  P S Phale; A Philippsen; C Widmer; V P Phale; J P Rosenbusch; T Schirmer
Journal:  Biochemistry       Date:  2001-05-29       Impact factor: 3.162

Review 2.  Solute uptake through general porins.

Authors:  Anne H Delcour
Journal:  Front Biosci       Date:  2003-05-01

Review 3.  Molecular basis of bacterial outer membrane permeability revisited.

Authors:  Hiroshi Nikaido
Journal:  Microbiol Mol Biol Rev       Date:  2003-12       Impact factor: 11.056

4.  Temperature-responsive protein pores.

Authors:  Yuni Jung; Hagan Bayley; Liviu Movileanu
Journal:  J Am Chem Soc       Date:  2006-11-29       Impact factor: 15.419

5.  Imaging alpha-hemolysin with molecular dynamics: ionic conductance, osmotic permeability, and the electrostatic potential map.

Authors:  Aleksij Aksimentiev; Klaus Schulten
Journal:  Biophys J       Date:  2005-03-11       Impact factor: 4.033

6.  Ion conduction through MscS as determined by electrophysiology and simulation.

Authors:  Marcos Sotomayor; Valeria Vásquez; Eduardo Perozo; Klaus Schulten
Journal:  Biophys J       Date:  2006-11-17       Impact factor: 4.033

7.  Orientation and interactions of dipolar molecules during transport through OmpF porin.

Authors:  Kindal M Robertson; D Peter Tieleman
Journal:  FEBS Lett       Date:  2002-09-25       Impact factor: 4.124

Review 8.  Theoretical and computational models of biological ion channels.

Authors:  Benoît Roux; Toby Allen; Simon Bernèche; Wonpil Im
Journal:  Q Rev Biophys       Date:  2004-02       Impact factor: 5.318

9.  Salting out the ionic selectivity of a wide channel: the asymmetry of OmpF.

Authors:  Antonio Alcaraz; Ekaterina M Nestorovich; Marcel Aguilella-Arzo; Vicente M Aguilella; Sergey M Bezrukov
Journal:  Biophys J       Date:  2004-08       Impact factor: 4.033

10.  Ions and counterions in a biological channel: a molecular dynamics simulation of OmpF porin from Escherichia coli in an explicit membrane with 1 M KCl aqueous salt solution.

Authors:  Wonpil Im; Benoît Roux
Journal:  J Mol Biol       Date:  2002-06-21       Impact factor: 5.469

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  31 in total

1.  Molecular dynamics simulations of lipid membrane electroporation.

Authors:  Lucie Delemotte; Mounir Tarek
Journal:  J Membr Biol       Date:  2012-05-30       Impact factor: 1.843

2.  Redesign of a plugged beta-barrel membrane protein.

Authors:  Mohammad M Mohammad; Khalil R Howard; Liviu Movileanu
Journal:  J Biol Chem       Date:  2010-12-28       Impact factor: 5.157

3.  Ionic partition and transport in multi-ionic channels: a molecular dynamics simulation study of the OmpF bacterial porin.

Authors:  Jordi Faraudo; Carles Calero; Marcel Aguilella-Arzo
Journal:  Biophys J       Date:  2010-10-06       Impact factor: 4.033

4.  Deciphering ionic current signatures of DNA transport through a nanopore.

Authors:  Aleksei Aksimentiev
Journal:  Nanoscale       Date:  2010-02-02       Impact factor: 7.790

5.  Transitions between closed and open conformations of TolC: the effects of ions in simulations.

Authors:  Robert Schulz; Ulrich Kleinekathöfer
Journal:  Biophys J       Date:  2009-04-22       Impact factor: 4.033

6.  Understanding ion conductance on a molecular level: an all-atom modeling of the bacterial porin OmpF.

Authors:  Soroosh Pezeshki; Catalin Chimerel; Andrey N Bessonov; Mathias Winterhalter; Ulrich Kleinekathöfer
Journal:  Biophys J       Date:  2009-10-07       Impact factor: 4.033

Review 7.  Controlling molecular transport through nanopores.

Authors:  Ulrich F Keyser
Journal:  J R Soc Interface       Date:  2011-06-29       Impact factor: 4.118

8.  Protein reconstitution into freestanding planar lipid membranes for electrophysiological characterization.

Authors:  Thomas Gutsmann; Thomas Heimburg; Ulrich Keyser; Kozhinjampara R Mahendran; Mathias Winterhalter
Journal:  Nat Protoc       Date:  2014-12-31       Impact factor: 13.491

9.  Universal Scaling of Robust Thermal Hot Spot and Ionic Current Enhancement by Focused Ohmic Heating in a Conic Nanopore.

Authors:  Zehao Pan; Ceming Wang; Meng Li; Hsueh-Chia Chang
Journal:  Phys Rev Lett       Date:  2016-09-21       Impact factor: 9.161

10.  Does the lipid environment impact the open-state conductance of an engineered β-barrel protein nanopore?

Authors:  Noriko Tomita; Mohammad M Mohammad; David J Niedzwiecki; Makoto Ohta; Liviu Movileanu
Journal:  Biochim Biophys Acta       Date:  2012-12-11
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