Literature DB >> 18722683

Single-molecule DNA sequencing technologies for future genomics research.

Pushpendra K Gupta1.   

Abstract

During the current genomics revolution, the genomes of a large number of living organisms have been fully sequenced. However, with the advent of new sequencing technologies, genomics research is now at the threshold of a second revolution. Several second-generation sequencing platforms became available in 2007, but a further revolution in DNA resequencing technologies is being witnessed in 2008, with the launch of the first single-molecule DNA sequencer (Helicos Biosciences), which has already been used to resequence the genome of the M13 virus. This review discusses several single-molecule sequencing technologies that are expected to become available during the next few years and explains how they might impact on genomics research.

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Year:  2008        PMID: 18722683     DOI: 10.1016/j.tibtech.2008.07.003

Source DB:  PubMed          Journal:  Trends Biotechnol        ISSN: 0167-7799            Impact factor:   19.536


  52 in total

1.  Identification of epigenetic DNA modifications with a protein nanopore.

Authors:  Emma V B Wallace; David Stoddart; Andrew J Heron; Ellina Mikhailova; Giovanni Maglia; Timothy J Donohoe; Hagan Bayley
Journal:  Chem Commun (Camb)       Date:  2010-10-06       Impact factor: 6.222

Review 2.  Rep-Seq: uncovering the immunological repertoire through next-generation sequencing.

Authors:  Jennifer Benichou; Rotem Ben-Hamo; Yoram Louzoun; Sol Efroni
Journal:  Immunology       Date:  2012-03       Impact factor: 7.397

3.  High-resolution typing by integration of genome sequencing data in a large tuberculosis cluster.

Authors:  Anita C Schürch; Kristin Kremer; Olaf Daviena; Albert Kiers; Martin J Boeree; Roland J Siezen; Dick van Soolingen
Journal:  J Clin Microbiol       Date:  2010-06-30       Impact factor: 5.948

Review 4.  Applications of next generation sequencing in molecular ecology of non-model organisms.

Authors:  R Ekblom; J Galindo
Journal:  Heredity (Edinb)       Date:  2010-12-08       Impact factor: 3.821

5.  Practical application of self-organizing maps to interrelate biodiversity and functional data in NGS-based metagenomics.

Authors:  Marc Weber; Hanno Teeling; Sixing Huang; Jost Waldmann; Mariette Kassabgy; Bernhard M Fuchs; Anna Klindworth; Christine Klockow; Antje Wichels; Gunnar Gerdts; Rudolf Amann; Frank Oliver Glöckner
Journal:  ISME J       Date:  2010-12-16       Impact factor: 10.302

6.  Tunable aqueous virtual micropore.

Authors:  Jae Hyun Park; Weihua Guan; Mark A Reed; Predrag S Krstić
Journal:  Small       Date:  2012-01-23       Impact factor: 13.281

7.  Single-nucleotide discrimination in immobilized DNA oligonucleotides with a biological nanopore.

Authors:  David Stoddart; Andrew J Heron; Ellina Mikhailova; Giovanni Maglia; Hagan Bayley
Journal:  Proc Natl Acad Sci U S A       Date:  2009-04-20       Impact factor: 11.205

8.  Deep sequencing maps the maize epigenomic landscape.

Authors:  Nancy A Eckardt
Journal:  Plant Cell       Date:  2009-04       Impact factor: 11.277

9.  Genome-wide mutational diversity in an evolving population of Escherichia coli.

Authors:  J E Barrick; R E Lenski
Journal:  Cold Spring Harb Symp Quant Biol       Date:  2009-09-23

Review 10.  Next-generation sequencing in aging research: emerging applications, problems, pitfalls and possible solutions.

Authors:  João Pedro de Magalhães; Caleb E Finch; Georges Janssens
Journal:  Ageing Res Rev       Date:  2009-11-10       Impact factor: 10.895

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