Literature DB >> 19557884

Deep sequencing maps the maize epigenomic landscape.

Nancy A Eckardt1.   

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Year:  2009        PMID： 19557884      PMCID： PMC2685621          DOI： 10.1105/tpc.109.068064

Source DB:  PubMed          Journal:  Plant Cell        ISSN： 1040-4651            Impact factor:   11.277


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  14 in total

1.  Gene expression analysis by massively parallel signature sequencing (MPSS) on microbead arrays.

Authors:  S Brenner; M Johnson; J Bridgham; G Golda; D H Lloyd; D Johnson; S Luo; S McCurdy; M Foy; M Ewan; R Roth; D George; S Eletr; G Albrecht; E Vermaas; S R Williams; K Moon; T Burcham; M Pallas; R B DuBridge; J Kirchner; K Fearon; J Mao; K Corcoran
Journal:  Nat Biotechnol       Date:  2000-06       Impact factor: 54.908

Review 2.  Massively parallel signature sequencing (MPSS) as a tool for in-depth quantitative gene expression profiling in all organisms.

Authors:  Jeanette Reinartz; Eddy Bruyns; Jing-Zhong Lin; Tim Burcham; Sydney Brenner; Ben Bowen; Michael Kramer; Rick Woychik
Journal:  Brief Funct Genomic Proteomic       Date:  2002-02

Review 3.  Next-generation sequencing transforms today's biology.

Authors:  Stephan C Schuster
Journal:  Nat Methods       Date:  2007-12-19       Impact factor: 28.547

Review 4.  Sequence census methods for functional genomics.

Authors:  Barbara Wold; Richard M Myers
Journal:  Nat Methods       Date:  2007-12-19       Impact factor: 28.547

Review 5.  Applications of next-generation sequencing technologies in functional genomics.

Authors:  Olena Morozova; Marco A Marra
Journal:  Genomics       Date:  2008-08-24       Impact factor: 5.736

Review 6.  Single-molecule DNA sequencing technologies for future genomics research.

Authors:  Pushpendra K Gupta
Journal:  Trends Biotechnol       Date:  2008-08-21       Impact factor: 19.536

7.  Distinct size distribution of endogeneous siRNAs in maize: Evidence from deep sequencing in the mop1-1 mutant.

Authors:  Kan Nobuta; Cheng Lu; Roli Shrivastava; Manoj Pillay; Emanuele De Paoli; Monica Accerbi; Mario Arteaga-Vazquez; Lyudmila Sidorenko; Dong-Hoon Jeong; Yang Yen; Pamela J Green; Vicki L Chandler; Blake C Meyers
Journal:  Proc Natl Acad Sci U S A       Date:  2008-09-24       Impact factor: 11.205

8.  Highly integrated single-base resolution maps of the epigenome in Arabidopsis.

Authors:  Ryan Lister; Ronan C O'Malley; Julian Tonti-Filippini; Brian D Gregory; Charles C Berry; A Harvey Millar; Joseph R Ecker
Journal:  Cell       Date:  2008-05-02       Impact factor: 41.582

9.  Genome-wide and organ-specific landscapes of epigenetic modifications and their relationships to mRNA and small RNA transcriptomes in maize.

Authors:  Xiangfeng Wang; Axel A Elling; Xueyong Li; Ning Li; Zhiyu Peng; Guangming He; Hui Sun; Yijun Qi; X Shirley Liu; Xing Wang Deng
Journal:  Plant Cell       Date:  2009-04-17       Impact factor: 11.277

10.  Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning.

Authors:  Shawn J Cokus; Suhua Feng; Xiaoyu Zhang; Zugen Chen; Barry Merriman; Christian D Haudenschild; Sriharsa Pradhan; Stanley F Nelson; Matteo Pellegrini; Steven E Jacobsen
Journal:  Nature       Date:  2008-02-17       Impact factor: 49.962
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  2 in total

Review 1.  Integrated genomics and molecular breeding approaches for dissecting the complex quantitative traits in crop plants.

Authors:  Alice Kujur; Maneesha S Saxena; Deepak Bajaj; Swarup K Parida
Journal:  J Biosci       Date:  2013-12       Impact factor: 1.826

2.  Differential Methylation of Genomic Regions Associated with Heteroblasty Detected by M&M Algorithm in the Nonmodel Species Eucalyptus globulus Labill.

Authors:  Rodrigo Hasbún; Carolina Iturra; Soraya Bravo; Boris Rebolledo-Jaramillo; Luis Valledor
Journal:  Int J Genomics       Date:  2016-03-30       Impact factor: 2.326
  2 in total

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