Literature DB >> 18719245

C. elegans and H. sapiens mRNAs with edited 3' UTRs are present on polysomes.

Heather A Hundley1, Ammie A Krauchuk, Brenda L Bass.   

Abstract

Adenosine deaminases that act on RNA (ADARs) are editing enzymes that convert adenosine to inosine in double-stranded RNA (dsRNA). ADARs sometimes target codons so that a single mRNA yields multiple protein isoforms. However, ADARs most often target noncoding regions of mRNAs, such as untranslated regions (UTRs). To understand the function of extensive double-stranded 3' UTR structures, and the inosines within them, we monitored the fate of reporter and endogenous mRNAs that include structured 3' UTRs in wild-type Caenorhabditis elegans and in strains with mutations in the ADAR genes. In general, we saw little effect of editing on stability or translatability of mRNA, although in one case an ADR-1 dependent effect was observed. Importantly, whereas previous studies indicate that inosine-containing RNAs are retained in the nucleus, we show that both C. elegans and Homo sapiens mRNAs with edited, structured 3' UTRs are present on translating ribosomes.

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Year:  2008        PMID: 18719245      PMCID: PMC2553745          DOI: 10.1261/rna.1165008

Source DB:  PubMed          Journal:  RNA        ISSN: 1355-8382            Impact factor:   4.942


  38 in total

1.  The human but not the Xenopus RNA-editing enzyme ADAR1 has an atypical nuclear localization signal and displays the characteristics of a shuttling protein.

Authors:  C R Eckmann; A Neunteufl; L Pfaffstetter; M F Jantsch
Journal:  Mol Biol Cell       Date:  2001-07       Impact factor: 4.138

2.  The fate of dsRNA in the nucleus: a p54(nrb)-containing complex mediates the nuclear retention of promiscuously A-to-I edited RNAs.

Authors:  Z Zhang; G G Carmichael
Journal:  Cell       Date:  2001-08-24       Impact factor: 41.582

Review 3.  RNA editing by adenosine deaminases that act on RNA.

Authors:  Brenda L Bass
Journal:  Annu Rev Biochem       Date:  2001-11-09       Impact factor: 23.643

Review 4.  RNA editing in regulating gene expression in the brain.

Authors:  James E C Jepson; Robert A Reenan
Journal:  Biochim Biophys Acta       Date:  2007-12-03

Review 5.  PSF and p54(nrb)/NonO--multi-functional nuclear proteins.

Authors:  Yaron Shav-Tal; Dov Zipori
Journal:  FEBS Lett       Date:  2002-11-06       Impact factor: 4.124

6.  Translocation of C. elegans CED-4 to nuclear membranes during programmed cell death.

Authors:  F Chen; B M Hersh; B Conradt; Z Zhou; D Riemer; Y Gruenbaum; H R Horvitz
Journal:  Science       Date:  2000-02-25       Impact factor: 47.728

7.  RNA editing by ADARs is important for normal behavior in Caenorhabditis elegans.

Authors:  Leath A Tonkin; Lisa Saccomanno; Daniel P Morse; Thomas Brodigan; Michael Krause; Brenda L Bass
Journal:  EMBO J       Date:  2002-11-15       Impact factor: 11.598

8.  RNA hairpins in noncoding regions of human brain and Caenorhabditis elegans mRNA are edited by adenosine deaminases that act on RNA.

Authors:  Daniel P Morse; P Joseph Aruscavage; Brenda L Bass
Journal:  Proc Natl Acad Sci U S A       Date:  2002-06-04       Impact factor: 11.205

9.  Genome-wide analysis of developmental and sex-regulated gene expression profiles in Caenorhabditis elegans.

Authors:  M Jiang; J Ryu; M Kiraly; K Duke; V Reinke; S K Kim
Journal:  Proc Natl Acad Sci U S A       Date:  2001-01-02       Impact factor: 11.205

10.  Exportin-5, a novel karyopherin, mediates nuclear export of double-stranded RNA binding proteins.

Authors:  Amy M Brownawell; Ian G Macara
Journal:  J Cell Biol       Date:  2002-01-03       Impact factor: 10.539

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  54 in total

Review 1.  The role of Alu elements in the cis-regulation of RNA processing.

Authors:  Chammiran Daniel; Mikaela Behm; Marie Öhman
Journal:  Cell Mol Life Sci       Date:  2015-07-30       Impact factor: 9.261

2.  Widespread cleavage of A-to-I hyperediting substrates.

Authors:  Sivan Osenberg; Dan Dominissini; Gideon Rechavi; Eli Eisenberg
Journal:  RNA       Date:  2009-07-21       Impact factor: 4.942

Review 3.  mRNA Editing, Processing and Quality Control in Caenorhabditis elegans.

Authors:  Joshua A Arribere; Hidehito Kuroyanagi; Heather A Hundley
Journal:  Genetics       Date:  2020-07       Impact factor: 4.562

4.  The dsRBP and inactive editor ADR-1 utilizes dsRNA binding to regulate A-to-I RNA editing across the C. elegans transcriptome.

Authors:  Michael C Washburn; Boyko Kakaradov; Balaji Sundararaman; Emily Wheeler; Shawn Hoon; Gene W Yeo; Heather A Hundley
Journal:  Cell Rep       Date:  2014-02-06       Impact factor: 9.423

5.  Noncoding regions of C. elegans mRNA undergo selective adenosine to inosine deamination and contain a small number of editing sites per transcript.

Authors:  Emily C Wheeler; Michael C Washburn; Francois Major; Douglas B Rusch; Heather A Hundley
Journal:  RNA Biol       Date:  2015       Impact factor: 4.652

Review 6.  ADAR editing in double-stranded UTRs and other noncoding RNA sequences.

Authors:  Heather A Hundley; Brenda L Bass
Journal:  Trends Biochem Sci       Date:  2010-04-08       Impact factor: 13.807

7.  Tudor-SN and ADAR1 are components of cytoplasmic stress granules.

Authors:  Rebekka Weissbach; A D J Scadden
Journal:  RNA       Date:  2012-01-12       Impact factor: 4.942

8.  A mammalian reporter system for fast and quantitative detection of intracellular A-to-I RNA editing levels.

Authors:  Willemijn M Gommans; Jill McCane; Gregory S Nacarelli; Stefan Maas
Journal:  Anal Biochem       Date:  2010-01-04       Impact factor: 3.365

9.  Altered nuclear retention of mRNAs containing inverted repeats in human embryonic stem cells: functional role of a nuclear noncoding RNA.

Authors:  Ling-Ling Chen; Gordon G Carmichael
Journal:  Mol Cell       Date:  2009-08-28       Impact factor: 17.970

10.  Adenosine deamination in human transcripts generates novel microRNA binding sites.

Authors:  Glen M Borchert; Brian L Gilmore; Ryan M Spengler; Yi Xing; William Lanier; Debashish Bhattacharya; Beverly L Davidson
Journal:  Hum Mol Genet       Date:  2009-09-23       Impact factor: 6.150

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