Literature DB >> 20382028

ADAR editing in double-stranded UTRs and other noncoding RNA sequences.

Heather A Hundley1, Brenda L Bass.   

Abstract

ADARs are a family of enzymes, present in all animals, that convert adenosine to inosine within double-stranded RNA (dsRNA). Inosine and adenosine have different base-pairing properties, and thus, editing alters RNA structure, coding potential and splicing patterns. The first ADAR substrates identified were edited in codons, and ADARs were presumed to function primarily in proteome diversification. Although this is an important function of ADARs, especially in the nervous system, editing in coding sequences is rare compared to editing in noncoding sequences. Introns and untranslated regions of mRNA are the primary noncoding targets, but editing also occurs in small RNAs, such as miRNAs. Although the role of editing in noncoding sequences remains unclear, ongoing research suggests functions in the regulation of a variety of post-transcriptional processes. Copyright 2010 Elsevier Ltd. All rights reserved.

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Year:  2010        PMID: 20382028      PMCID: PMC2897959          DOI: 10.1016/j.tibs.2010.02.008

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN: 0968-0004            Impact factor:   13.807


  71 in total

1.  A starvation-induced noncoding RNA modulates expression of Dicer-regulated genes.

Authors:  Sabine Hellwig; Brenda L Bass
Journal:  Proc Natl Acad Sci U S A       Date:  2008-08-22       Impact factor: 11.205

Review 2.  Gene regulation by SINES and inosines: biological consequences of A-to-I editing of Alu element inverted repeats.

Authors:  Ling-Ling Chen; Gordon G Carmichael
Journal:  Cell Cycle       Date:  2008-11-05       Impact factor: 4.534

Review 3.  Origins and Mechanisms of miRNAs and siRNAs.

Authors:  Richard W Carthew; Erik J Sontheimer
Journal:  Cell       Date:  2009-02-20       Impact factor: 41.582

4.  MENepsilon/beta noncoding RNAs are essential for structural integrity of nuclear paraspeckles.

Authors:  Yasnory T F Sasaki; Takashi Ideue; Miho Sano; Toutai Mituyama; Tetsuro Hirose
Journal:  Proc Natl Acad Sci U S A       Date:  2009-02-02       Impact factor: 11.205

5.  An architectural role for a nuclear noncoding RNA: NEAT1 RNA is essential for the structure of paraspeckles.

Authors:  Christine M Clemson; John N Hutchinson; Sergio A Sara; Alexander W Ensminger; Archa H Fox; Andrew Chess; Jeanne B Lawrence
Journal:  Mol Cell       Date:  2009-02-12       Impact factor: 17.970

6.  Altered nuclear retention of mRNAs containing inverted repeats in human embryonic stem cells: functional role of a nuclear noncoding RNA.

Authors:  Ling-Ling Chen; Gordon G Carmichael
Journal:  Mol Cell       Date:  2009-08-28       Impact factor: 17.970

7.  MEN epsilon/beta nuclear-retained non-coding RNAs are up-regulated upon muscle differentiation and are essential components of paraspeckles.

Authors:  Hongjae Sunwoo; Marcel E Dinger; Jeremy E Wilusz; Paulo P Amaral; John S Mattick; David L Spector
Journal:  Genome Res       Date:  2008-12-22       Impact factor: 9.043

8.  C. elegans and H. sapiens mRNAs with edited 3' UTRs are present on polysomes.

Authors:  Heather A Hundley; Ammie A Krauchuk; Brenda L Bass
Journal:  RNA       Date:  2008-08-21       Impact factor: 4.942

9.  Frequency and fate of microRNA editing in human brain.

Authors:  Yukio Kawahara; Molly Megraw; Edward Kreider; Hisashi Iizasa; Louis Valente; Artemis G Hatzigeorgiou; Kazuko Nishikura
Journal:  Nucleic Acids Res       Date:  2008-08-06       Impact factor: 16.971

10.  ADAR1 is essential for the maintenance of hematopoiesis and suppression of interferon signaling.

Authors:  Jochen C Hartner; Carl R Walkley; Jun Lu; Stuart H Orkin
Journal:  Nat Immunol       Date:  2008-12-07       Impact factor: 25.606

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  87 in total

1.  Host response to polyomavirus infection is modulated by RNA adenosine deaminase ADAR1 but not by ADAR2.

Authors:  Cyril X George; Charles E Samuel
Journal:  J Virol       Date:  2011-06-01       Impact factor: 5.103

2.  Transcriptional priming of cytoplasmic post-transcriptional regulation.

Authors:  Itay Tirosh
Journal:  Transcription       Date:  2011-11-01

Review 3.  Biological significance of RNA editing in cells.

Authors:  Wei Tang; Yongjun Fei; Michael Page
Journal:  Mol Biotechnol       Date:  2012-09       Impact factor: 2.695

Review 4.  Diversifying microRNA sequence and function.

Authors:  Stefan L Ameres; Phillip D Zamore
Journal:  Nat Rev Mol Cell Biol       Date:  2013-06-26       Impact factor: 94.444

Review 5.  Enhancement of replication of RNA viruses by ADAR1 via RNA editing and inhibition of RNA-activated protein kinase.

Authors:  Jean-François Gélinas; Guerline Clerzius; Eileen Shaw; Anne Gatignol
Journal:  J Virol       Date:  2011-04-13       Impact factor: 5.103

6.  Characterization and comparison of human nuclear and cytosolic editomes.

Authors:  Liang Chen
Journal:  Proc Natl Acad Sci U S A       Date:  2013-07-01       Impact factor: 11.205

7.  Quantification of adenosine-to-inosine editing of microRNAs using a conventional method.

Authors:  Yukio Kawahara
Journal:  Nat Protoc       Date:  2012-06-28       Impact factor: 13.491

Review 8.  ADARs: viruses and innate immunity.

Authors:  Charles E Samuel
Journal:  Curr Top Microbiol Immunol       Date:  2012       Impact factor: 4.291

Review 9.  Non-coding RNA networks underlying cognitive disorders across the lifespan.

Authors:  Irfan A Qureshi; Mark F Mehler
Journal:  Trends Mol Med       Date:  2011-03-15       Impact factor: 11.951

Review 10.  The rise of regulatory RNA.

Authors:  Kevin V Morris; John S Mattick
Journal:  Nat Rev Genet       Date:  2014-04-29       Impact factor: 53.242

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