Literature DB >> 18716883

Developments in statistical analysis in quantitative genetics.

Daniel Sorensen1.   

Abstract

A remarkable research impetus has taken place in statistical genetics since the last World Conference. This has been stimulated by breakthroughs in molecular genetics, automated data-recording devices and computer-intensive statistical methods. The latter were revolutionized by the bootstrap and by Markov chain Monte Carlo (McMC). In this overview a number of specific areas are chosen to illustrate the enormous flexibility that McMC has provided for fitting models and exploring features of data that were previously inaccessible. The selected areas are inferences of the trajectories over time of genetic means and variances, models for the analysis of categorical and count data, the statistical genetics of a model postulating that environmental variance is partly under genetic control, and a short discussion of models that incorporate massive genetic marker information. We provide an overview of the application of McMC to study model fit, and finally, a discussion is presented on the development of efficient McMC updating schemes for non-standard models.

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Year:  2008        PMID: 18716883     DOI: 10.1007/s10709-008-9303-5

Source DB:  PubMed          Journal:  Genetica        ISSN: 0016-6707            Impact factor:   1.082


  35 in total

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Authors:  J Detilleux; P L Leroy
Journal:  J Dairy Sci       Date:  2000-10       Impact factor: 4.034

2.  Best linear unbiased estimation and prediction under a selection model.

Authors:  C R Henderson
Journal:  Biometrics       Date:  1975-06       Impact factor: 2.571

3.  Bayesian prediction of spatial count data using generalized linear mixed models.

Authors:  Ole F Christensen; Rasmus Waagepetersen
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4.  A study of heterogeneity of environmental variance for slaughter weight in pigs.

Authors:  N Ibáñez-Escriche; L Varona; D Sorensen; J L Noguera
Journal:  Animal       Date:  2008-01       Impact factor: 3.240

5.  Mixed model analysis of a selection experiment for food intake in mice.

Authors:  K Meyer; W G Hill
Journal:  Genet Res       Date:  1991-02       Impact factor: 1.588

6.  Evidence for genetic control of adult weight plasticity in the snail Helix aspersa.

Authors:  Mathieu Ros; Daniel Sorensen; Rasmus Waagepetersen; Mathilde Dupont-Nivet; Magali SanCristobal; Jean-Claude Bonnet; Jacques Mallard
Journal:  Genetics       Date:  2004-12       Impact factor: 4.562

7.  Evolution of the environmental component of the phenotypic variance: stabilizing selection in changing environments and the cost of homogeneity.

Authors:  Xu-Sheng Zhang; William G Hill
Journal:  Evolution       Date:  2005-06       Impact factor: 3.694

8.  A bivariate quantitative genetic model for a linear Gaussian trait and a survival trait.

Authors:  Lars Holm Damgaard; Inge Riis Korsgaard
Journal:  Genet Sel Evol       Date:  2006 Jan-Feb       Impact factor: 4.297

Review 9.  Drosophila bristles and the nature of quantitative genetic variation.

Authors:  Trudy F Mackay; Richard F Lyman
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2005-07-29       Impact factor: 6.237

10.  Genetic heterogeneity of residual variance in broiler chickens.

Authors:  Suzanne J Rowe; Ian M S White; Santiago Avendaño; William G Hill
Journal:  Genet Sel Evol       Date:  2006-11-28       Impact factor: 4.297

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  6 in total

1.  Accounting for Sampling Error in Genetic Eigenvalues Using Random Matrix Theory.

Authors:  Jacqueline L Sztepanacz; Mark W Blows
Journal:  Genetics       Date:  2017-05-05       Impact factor: 4.562

2.  Bayesian inference of mixed models in quantitative genetics of crop species.

Authors:  Fabyano Fonseca E Silva; José Marcelo Soriano Viana; Vinícius Ribeiro Faria; Marcos Deon Vilela de Resende
Journal:  Theor Appl Genet       Date:  2013-04-20       Impact factor: 5.699

3.  Recent developments in statistical methods for detecting genetic loci affecting phenotypic variability.

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Journal:  BMC Genet       Date:  2012-07-24       Impact factor: 2.797

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Authors:  Flavia Alves da Silva; Alexandre Pio Viana; Caio Cezar Guedes Corrêa; Beatriz Murizini Carvalho; Carlos Misael Bezerra de Sousa; Bruno Dias Amaral; Moisés Ambrósio; Leonardo Siqueira Glória
Journal:  Sci Rep       Date:  2020-02-06       Impact factor: 4.379

5.  Multiple-trait model through Bayesian inference applied to Jatropha curcas breeding for bioenergy.

Authors:  Marco Antônio Peixoto; Jeniffer Santana Pinto Coelho Evangelista; Igor Ferreira Coelho; Rodrigo Silva Alves; Bruno Gâlveas Laviola; Fabyano Fonseca E Silva; Marcos Deon Vilela de Resende; Leonardo Lopes Bhering
Journal:  PLoS One       Date:  2021-03-04       Impact factor: 3.240

Review 6.  From genotype to phenotype: can systems biology be used to predict Staphylococcus aureus virulence?

Authors:  Nicholas K Priest; Justine K Rudkin; Edward J Feil; Jean M H van den Elsen; Ambrose Cheung; Sharon J Peacock; Maisem Laabei; David A Lucks; Mario Recker; Ruth C Massey
Journal:  Nat Rev Microbiol       Date:  2012-11       Impact factor: 60.633

  6 in total

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