Literature DB >> 33661980

Multiple-trait model through Bayesian inference applied to Jatropha curcas breeding for bioenergy.

Marco Antônio Peixoto1, Jeniffer Santana Pinto Coelho Evangelista1, Igor Ferreira Coelho1, Rodrigo Silva Alves2, Bruno Gâlveas Laviola3, Fabyano Fonseca E Silva1, Marcos Deon Vilela de Resende4, Leonardo Lopes Bhering1.   

Abstract

Multiple-trait model tends to be the best alternative for the analysis of repeated measures, since they consider the genetic and residual correlations between measures and improve the selective accuracy. Thus, the objective of this study was to propose a multiple-trait Bayesian model for repeated measures analysis in Jatropha curcas breeding for bioenergy. To this end, the grain yield trait of 730 individuals of 73 half-sib families was evaluated over six harvests. The Markov Chain Monte Carlo algorithm was used to estimate genetic parameters and genetic values. Genetic correlation between pairs of measures were estimated and four selective intensities (27.4%, 20.5%, 13.7%, and 6.9%) were used to compute the selection gains. The full model was selected based on deviance information criterion. Genetic correlations of low (ρg ≤ 0.33), moderate (0.34 ≤ ρg ≤ 0.66), and high magnitude (ρg ≥ 0.67) were observed between pairs of harvests. Bayesian analyses provide robust inference of genetic parameters and genetic values, with high selective accuracies. In summary, the multiple-trait Bayesian model allowed the reliable selection of superior Jatropha curcas progenies. Therefore, we recommend this model to genetic evaluation of Jatropha curcas genotypes, and its generalization, in other perennials.

Entities:  

Year:  2021        PMID: 33661980      PMCID: PMC7932130          DOI: 10.1371/journal.pone.0247775

Source DB:  PubMed          Journal:  PLoS One        ISSN: 1932-6203            Impact factor:   3.240


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Authors:  A Blasco
Journal:  J Anim Sci       Date:  2001-08       Impact factor: 3.159

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Authors:  Mark A Beaumont; Bruce Rannala
Journal:  Nat Rev Genet       Date:  2004-04       Impact factor: 53.242

Review 3.  Developments in statistical analysis in quantitative genetics.

Authors:  Daniel Sorensen
Journal:  Genetica       Date:  2008-08-21       Impact factor: 1.082

4.  Multivariate diallel analysis allows multiple gains in segregating populations for agronomic traits in Jatropha.

Authors:  P E Teodoro; E V Rodrigues; L A Peixoto; L A Silva; B G Laviola; L L Bhering
Journal:  Genet Mol Res       Date:  2017-03-22

5.  Bayesian inference of mixed models in quantitative genetics of crop species.

Authors:  Fabyano Fonseca E Silva; José Marcelo Soriano Viana; Vinícius Ribeiro Faria; Marcos Deon Vilela de Resende
Journal:  Theor Appl Genet       Date:  2013-04-20       Impact factor: 5.699

6.  Multi-trait multi-environment Bayesian model reveals G x E interaction for nitrogen use efficiency components in tropical maize.

Authors:  Lívia Gomes Torres; Mateus Cupertino Rodrigues; Nathan Lamounier Lima; Tatiane Freitas Horta Trindade; Fabyano Fonseca E Silva; Camila Ferreira Azevedo; Rodrigo Oliveira DeLima
Journal:  PLoS One       Date:  2018-06-27       Impact factor: 3.240

7.  Multi-trait multi-environment models in the genetic selection of segregating soybean progeny.

Authors:  Leonardo Volpato; Rodrigo Silva Alves; Paulo Eduardo Teodoro; Marcos Deon Vilela de Resende; Moysés Nascimento; Ana Carolina Campana Nascimento; Willian Hytalo Ludke; Felipe Lopes da Silva; Aluízio Borém
Journal:  PLoS One       Date:  2019-04-18       Impact factor: 3.240

8.  Impact of Bayesian Inference on the Selection of Psidium guajava.

Authors:  Flavia Alves da Silva; Alexandre Pio Viana; Caio Cezar Guedes Corrêa; Beatriz Murizini Carvalho; Carlos Misael Bezerra de Sousa; Bruno Dias Amaral; Moisés Ambrósio; Leonardo Siqueira Glória
Journal:  Sci Rep       Date:  2020-02-06       Impact factor: 4.379

9.  Bayesian Multi-Trait Analysis Reveals a Useful Tool to Increase Oil Concentration and to Decrease Toxicity in Jatropha curcas L.

Authors:  Vinícius Silva Junqueira; Leonardo de Azevedo Peixoto; Bruno Galvêas Laviola; Leonardo Lopes Bhering; Simone Mendonça; Tania da Silveira Agostini Costa; Rosemar Antoniassi
Journal:  PLoS One       Date:  2016-06-09       Impact factor: 3.240

  9 in total
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1.  Multi-trait and multi-environment Bayesian analysis to predict the G x E interaction in flood-irrigated rice.

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Journal:  PLoS One       Date:  2022-05-03       Impact factor: 3.752

  1 in total

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