Literature DB >> 18708458

Hydrogen bond switching among flavin and amino acid side chains in the BLUF photoreceptor observed by ultrafast infrared spectroscopy.

Cosimo Bonetti1, Tilo Mathes, Ivo H M van Stokkum, Katharine M Mullen, Marie-Louise Groot, Rienk van Grondelle, Peter Hegemann, John T M Kennis.   

Abstract

BLUF domains constitute a recently discovered class of photoreceptor proteins found in bacteria and eukaryotic algae. BLUF domains are blue-light sensitive through a FAD cofactor that is involved in an extensive hydrogen-bond network with nearby amino acid side chains, including a highly conserved tyrosine and glutamine. The participation of particular amino acid side chains in the ultrafast hydrogen-bond switching reaction with FAD that underlies photoactivation of BLUF domains is assessed by means of ultrafast infrared spectroscopy. Blue-light absorption by FAD results in formation of FAD(*-) and a bleach of the tyrosine ring vibrational mode on a picosecond timescale, showing that electron transfer from tyrosine to FAD constitutes the primary photochemistry. This interpretation is supported by the absence of a kinetic isotope effect on the fluorescence decay on H/D exchange. Subsequent protonation of FAD(*-) to result in FADH(*) on a picosecond timescale is evidenced by the appearance of a N-H bending mode at the FAD N5 protonation site and of a FADH(*) C=N stretch marker mode, with tyrosine as the likely proton donor. FADH(*) is reoxidized in 67 ps (180 ps in D(2)O) to result in a long-lived hydrogen-bond switched network around FAD. This hydrogen-bond switch shows infrared signatures from the C-OH stretch of tyrosine and the FAD C4=O and C=N stretches, which indicate increased hydrogen-bond strength at all these sites. The results support a previously hypothesized rotation of glutamine by approximately 180 degrees through a light-driven radical-pair mechanism as the determinant of the hydrogen-bond switch.

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Year:  2008        PMID: 18708458      PMCID: PMC2576356          DOI: 10.1529/biophysj.108.139246

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  67 in total

1.  Vibrational spectroscopy of an algal Phot-LOV1 domain probes the molecular changes associated with blue-light reception.

Authors:  K Ataka; P Hegemann; J Heberle
Journal:  Biophys J       Date:  2003-01       Impact factor: 4.033

2.  The LOV domain family: photoresponsive signaling modules coupled to diverse output domains.

Authors:  Sean Crosson; Sudarshan Rajagopal; Keith Moffat
Journal:  Biochemistry       Date:  2003-01-14       Impact factor: 3.162

3.  Phot-LOV1: photocycle of a blue-light receptor domain from the green alga Chlamydomonas reinhardtii.

Authors:  Tilman Kottke; Joachim Heberle; Dominic Hehn; Bernhard Dick; Peter Hegemann
Journal:  Biophys J       Date:  2003-02       Impact factor: 4.033

4.  Time-resolved spectroscopic studies of the AppA blue-light receptor BLUF domain from Rhodobacter sphaeroides.

Authors:  Vladimira Dragnea; Matthias Waegele; Septimiu Balascuta; Carl Bauer; Bogdan Dragnea
Journal:  Biochemistry       Date:  2005-12-13       Impact factor: 3.162

5.  On the mechanism of activation of the BLUF domain of AppA.

Authors:  Wouter Laan; Magdalena Gauden; Sergey Yeremenko; Rienk van Grondelle; John T M Kennis; Klaas J Hellingwerf
Journal:  Biochemistry       Date:  2006-01-10       Impact factor: 3.162

6.  Primary steps of the photoactive yellow protein: isolated chromophore dynamics and protein directed function.

Authors:  I-Ren Lee; Wonchul Lee; Ahmed H Zewail
Journal:  Proc Natl Acad Sci U S A       Date:  2006-01-03       Impact factor: 11.205

7.  Structural evolution of the chromophore in the primary stages of trans/cis isomerization in photoactive yellow protein.

Authors:  Karsten Heyne; Omar F Mohammed; Anwar Usman; Jens Dreyer; Erik T J Nibbering; Michael A Cusanovich
Journal:  J Am Chem Soc       Date:  2005-12-28       Impact factor: 15.419

8.  Biochemical and functional characterization of BLUF-type flavin-binding proteins of two species of cyanobacteria.

Authors:  Koji Okajima; Shizue Yoshihara; Yoshimasa Fukushima; Xiaoxing Geng; Mitsunori Katayama; Shoichi Higashi; Masakatsu Watanabe; Shusei Sato; Satoshi Tabata; Yutaka Shibata; Shigeru Itoh; Masahiko Ikeuchi
Journal:  J Biochem       Date:  2005-06       Impact factor: 3.387

9.  Structure of a novel photoreceptor, the BLUF domain of AppA from Rhodobacter sphaeroides.

Authors:  Spencer Anderson; Vladimira Dragnea; Shinji Masuda; Joel Ybe; Keith Moffat; Carl Bauer
Journal:  Biochemistry       Date:  2005-06-07       Impact factor: 3.162

10.  Structure of a bacterial BLUF photoreceptor: insights into blue light-mediated signal transduction.

Authors:  Astrid Jung; Tatiana Domratcheva; Marina Tarutina; Qiong Wu; Wen-Huang Ko; Robert L Shoeman; Mark Gomelsky; Kevin H Gardner; Ilme Schlichting
Journal:  Proc Natl Acad Sci U S A       Date:  2005-08-17       Impact factor: 11.205

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  27 in total

1.  Electronic and protein structural dynamics of a photosensory histidine kinase.

Authors:  Maxime T A Alexandre; Erin B Purcell; Rienk van Grondelle; Bruno Robert; John T M Kennis; Sean Crosson
Journal:  Biochemistry       Date:  2010-06-15       Impact factor: 3.162

2.  Primary reactions of the LOV2 domain of phototropin studied with ultrafast mid-infrared spectroscopy and quantum chemistry.

Authors:  Maxime T A Alexandre; Tatiana Domratcheva; Cosimo Bonetti; Luuk J G W van Wilderen; Rienk van Grondelle; Marie-Louise Groot; Klaas J Hellingwerf; John T M Kennis
Journal:  Biophys J       Date:  2009-07-08       Impact factor: 4.033

3.  Redox modulation of flavin and tyrosine determines photoinduced proton-coupled electron transfer and photoactivation of BLUF photoreceptors.

Authors:  Tilo Mathes; Ivo H M van Stokkum; Manuela Stierl; John T M Kennis
Journal:  J Biol Chem       Date:  2012-07-25       Impact factor: 5.157

4.  Structural refinement of a key tryptophan residue in the BLUF photoreceptor AppA by ultraviolet resonance Raman spectroscopy.

Authors:  Masashi Unno; Sadato Kikuchi; Shinji Masuda
Journal:  Biophys J       Date:  2010-05-19       Impact factor: 4.033

5.  Photoactivation of the BLUF Protein PixD Probed by the Site-Specific Incorporation of Fluorotyrosine Residues.

Authors:  Agnieszka A Gil; Sergey P Laptenok; James N Iuliano; Andras Lukacs; Anil Verma; Christopher R Hall; Grace E Yoon; Richard Brust; Gregory M Greetham; Michael Towrie; Jarrod B French; Stephen R Meech; Peter J Tonge
Journal:  J Am Chem Soc       Date:  2017-10-05       Impact factor: 15.419

6.  Role of active site conformational changes in photocycle activation of the AppA BLUF photoreceptor.

Authors:  Puja Goyal; Sharon Hammes-Schiffer
Journal:  Proc Natl Acad Sci U S A       Date:  2017-01-30       Impact factor: 11.205

7.  Formation of an unusual glutamine tautomer in a blue light using flavin photocycle characterizes the light-adapted state.

Authors:  Joshua J Goings; Pengfei Li; Qiwen Zhu; Sharon Hammes-Schiffer
Journal:  Proc Natl Acad Sci U S A       Date:  2020-10-09       Impact factor: 11.205

8.  The primary photophysics of the Avena sativa phototropin 1 LOV2 domain observed with time-resolved emission spectroscopy.

Authors:  Ivo H M van Stokkum; Magdalena Gauden; Sean Crosson; Rienk van Grondelle; Keith Moffat; John T M Kennis
Journal:  Photochem Photobiol       Date:  2011-02-22       Impact factor: 3.421

9.  Mutational and structural studies of the PixD BLUF output signal that affects light-regulated interactions with PixE.

Authors:  Hua Yuan; Vladimira Dragnea; Qiong Wu; Kevin H Gardner; Carl E Bauer
Journal:  Biochemistry       Date:  2011-06-28       Impact factor: 3.162

10.  Physical methods for studying flavoprotein photoreceptors.

Authors:  Estella F Yee; Siddarth Chandrasekaran; Changfan Lin; Brian R Crane
Journal:  Methods Enzymol       Date:  2019-04-04       Impact factor: 1.600

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