Literature DB >> 18707183

Chemical denaturants inhibit the onset of dewetting.

Jeremy L England1, Vijay S Pande, Gilad Haran.   

Abstract

The mechanism by which the aqueous cosolvents guanidinium chloride and urea denature proteins is a matter of controversy. Here, we use all-atom molecular dynamics simulations to study the effect of both denaturants on the dewetting of water confined between nanoseparated hydrophobic plates. It is found that the denaturants inhibit the onset of dewetting, so that it occurs at shorter interplate distances than in pure water. Our results support a role for urea and guanidinium in assisting in the solvation of nonpolar surfaces, thereby weakening hydrophobic effects known to be important for protein stability.

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Year:  2008        PMID: 18707183      PMCID: PMC2637366          DOI: 10.1021/ja803972g

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  20 in total

1.  Molecular dynamics simulations of end-to-end contact formation in hydrocarbon chains in water and aqueous urea solution.

Authors:  Raymond D Mountain; D Thirumalai
Journal:  J Am Chem Soc       Date:  2003-02-19       Impact factor: 15.419

2.  Predicting the energetics of osmolyte-induced protein folding/unfolding.

Authors:  Matthew Auton; D Wayne Bolen
Journal:  Proc Natl Acad Sci U S A       Date:  2005-10-07       Impact factor: 11.205

3.  Observation of a dewetting transition in the collapse of the melittin tetramer.

Authors:  Pu Liu; Xuhui Huang; Ruhong Zhou; B J Berne
Journal:  Nature       Date:  2005-09-01       Impact factor: 49.962

4.  A molecular mechanism for osmolyte-induced protein stability.

Authors:  Timothy O Street; D Wayne Bolen; George D Rose
Journal:  Proc Natl Acad Sci U S A       Date:  2006-09-12       Impact factor: 11.205

5.  Solvent coarse-graining and the string method applied to the hydrophobic collapse of a hydrated chain.

Authors:  Thomas F Miller; Eric Vanden-Eijnden; David Chandler
Journal:  Proc Natl Acad Sci U S A       Date:  2007-08-28       Impact factor: 11.205

6.  The hydration structure of guanidinium and thiocyanate ions: implications for protein stability in aqueous solution.

Authors:  P E Mason; G W Neilson; C E Dempsey; A C Barnes; J M Cruickshank
Journal:  Proc Natl Acad Sci U S A       Date:  2003-04-08       Impact factor: 11.205

7.  Water dynamics and dewetting transitions in the small mechanosensitive channel MscS.

Authors:  Andriy Anishkin; Sergei Sukharev
Journal:  Biophys J       Date:  2004-05       Impact factor: 4.033

8.  Aqueous urea solutions: structure, energetics, and urea aggregation.

Authors:  Martin C Stumpe; Helmut Grubmüller
Journal:  J Phys Chem B       Date:  2007-05-11       Impact factor: 2.991

9.  Urea and guanidinium chloride denature protein L in different ways in molecular dynamics simulations.

Authors:  C Camilloni; A Guerini Rocco; I Eberini; E Gianazza; R A Broglia; G Tiana
Journal:  Biophys J       Date:  2008-03-13       Impact factor: 4.033

10.  Interactions between hydrophobic and ionic solutes in aqueous guanidinium chloride and urea solutions: lessons for protein denaturation mechanism.

Authors:  Edward P O'Brien; Ruxandra I Dima; Bernard Brooks; D Thirumalai
Journal:  J Am Chem Soc       Date:  2007-05-16       Impact factor: 15.419

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  15 in total

1.  To fold or expand--a charged question.

Authors:  Jeremy L England; Gilad Haran
Journal:  Proc Natl Acad Sci U S A       Date:  2010-08-03       Impact factor: 11.205

2.  Quantitative assessments of the distinct contributions of polypeptide backbone amides versus side chain groups to chain expansion via chemical denaturation.

Authors:  Alex S Holehouse; Kanchan Garai; Nicholas Lyle; Andreas Vitalis; Rohit V Pappu
Journal:  J Am Chem Soc       Date:  2015-02-23       Impact factor: 15.419

3.  Protein structural dynamics at the gas/water interface examined by hydrogen exchange mass spectrometry.

Authors:  Yiming Xiao; Lars Konermann
Journal:  Protein Sci       Date:  2015-04-02       Impact factor: 6.725

Review 4.  Biomolecular electrostatics and solvation: a computational perspective.

Authors:  Pengyu Ren; Jaehun Chun; Dennis G Thomas; Michael J Schnieders; Marcelo Marucho; Jiajing Zhang; Nathan A Baker
Journal:  Q Rev Biophys       Date:  2012-11       Impact factor: 5.318

Review 5.  Urea-aromatic interactions in biology.

Authors:  Shampa Raghunathan; Tanashree Jaganade; U Deva Priyakumar
Journal:  Biophys Rev       Date:  2020-02-17

6.  Calculation of local water densities in biological systems: a comparison of molecular dynamics simulations and the 3D-RISM-KH molecular theory of solvation.

Authors:  Martin C Stumpe; Nikolay Blinov; David Wishart; Andriy Kovalenko; Vijay S Pande
Journal:  J Phys Chem B       Date:  2010-12-21       Impact factor: 2.991

7.  Sitting at the edge: how biomolecules use hydrophobicity to tune their interactions and function.

Authors:  Amish J Patel; Patrick Varilly; Sumanth N Jamadagni; Michael F Hagan; David Chandler; Shekhar Garde
Journal:  J Phys Chem B       Date:  2012-02-16       Impact factor: 2.991

Review 8.  Role of solvation effects in protein denaturation: from thermodynamics to single molecules and back.

Authors:  Jeremy L England; Gilad Haran
Journal:  Annu Rev Phys Chem       Date:  2011       Impact factor: 12.703

9.  Protein folding, protein collapse, and tanford's transfer model: lessons from single-molecule FRET.

Authors:  Guy Ziv; Gilad Haran
Journal:  J Am Chem Soc       Date:  2009-03-04       Impact factor: 15.419

Review 10.  Using simulations to provide the framework for experimental protein folding studies.

Authors:  Bruno Rizzuti; Valerie Daggett
Journal:  Arch Biochem Biophys       Date:  2012-12-22       Impact factor: 4.013

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