Literature DB >> 16214887

Predicting the energetics of osmolyte-induced protein folding/unfolding.

Matthew Auton1, D Wayne Bolen.   

Abstract

A primary thermodynamic goal in protein biochemistry is to attain predictive understanding of the detailed energetic changes that are responsible for folding/unfolding. Through use of recently determined free energies of side-chain and backbone transfer from water to osmolytes and Tanford's transfer model, we demonstrate that the long-sought goal of predicting solvent-dependent cooperative protein folding/unfolding free-energy changes (m values) can be achieved. Moreover, the approach permits dissection of the folding/unfolding free-energy changes into individual contributions from the peptide backbone and residue side chains.

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Year:  2005        PMID: 16214887      PMCID: PMC1257718          DOI: 10.1073/pnas.0507053102

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  27 in total

1.  The paradox between m values and deltaCp's for denaturation of ribonuclease T1 with disulfide bonds intact and broken.

Authors:  I V Baskakov; D W Bolen
Journal:  Protein Sci       Date:  1999-06       Impact factor: 6.725

2.  THE SOLUBILITY OF AMINO ACIDS AND RELATED COMPOUNDS IN AQUEOUS UREA SOLUTIONS.

Authors:  Y NOZAKI; C TANFORD
Journal:  J Biol Chem       Date:  1963-12       Impact factor: 5.157

Review 3.  Dominant forces in protein folding.

Authors:  K A Dill
Journal:  Biochemistry       Date:  1990-08-07       Impact factor: 3.162

4.  Osmolyte-driven contraction of a random coil protein.

Authors:  Y Qu; C L Bolen; D W Bolen
Journal:  Proc Natl Acad Sci U S A       Date:  1998-08-04       Impact factor: 11.205

5.  Monitoring the sizes of denatured ensembles of staphylococcal nuclease proteins: implications regarding m values, intermediates, and thermodynamics.

Authors:  I V Baskakov; D W Bolen
Journal:  Biochemistry       Date:  1998-12-22       Impact factor: 3.162

6.  Modeling unfolded states of proteins and peptides. II. Backbone solvent accessibility.

Authors:  T P Creamer; R Srinivasan; G D Rose
Journal:  Biochemistry       Date:  1997-03-11       Impact factor: 3.162

7.  A naturally occurring protective system in urea-rich cells: mechanism of osmolyte protection of proteins against urea denaturation.

Authors:  A Wang; D W Bolen
Journal:  Biochemistry       Date:  1997-07-29       Impact factor: 3.162

8.  Forcing thermodynamically unfolded proteins to fold.

Authors:  I Baskakov; D W Bolen
Journal:  J Biol Chem       Date:  1998-02-27       Impact factor: 5.157

9.  Buried, charged, non-ion-paired aspartic acid 76 contributes favorably to the conformational stability of ribonuclease T1.

Authors:  A Giletto; C N Pace
Journal:  Biochemistry       Date:  1999-10-05       Impact factor: 3.162

10.  The peptide backbone plays a dominant role in protein stabilization by naturally occurring osmolytes.

Authors:  Y Liu; D W Bolen
Journal:  Biochemistry       Date:  1995-10-03       Impact factor: 3.162

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  127 in total

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Journal:  J Biol Chem       Date:  2012-06-04       Impact factor: 5.157

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Authors:  Edward P O'Brien; Bernard R Brooks; D Thirumalai
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Journal:  Proc Natl Acad Sci U S A       Date:  2012-05-25       Impact factor: 11.205

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6.  The N-terminal capping propensities of the D-helix modulate the allosteric activation of the Escherichia coli cAMP receptor protein.

Authors:  Shaoning Yu; Rodrigo A Maillard; Alexey V Gribenko; J Ching Lee
Journal:  J Biol Chem       Date:  2012-10-03       Impact factor: 5.157

Review 7.  Effect of trehalose on protein structure.

Authors:  Nishant Kumar Jain; Ipsita Roy
Journal:  Protein Sci       Date:  2009-01       Impact factor: 6.725

8.  The unsolved "solved-problem" of protein folding.

Authors:  B Montgomery Pettitt
Journal:  J Biomol Struct Dyn       Date:  2013-02-05

Review 9.  Amyloid beta-protein assembly as a therapeutic target of Alzheimer's disease.

Authors:  Ghiam Yamin; Kenjiro Ono; Mohammed Inayathullah; David B Teplow
Journal:  Curr Pharm Des       Date:  2008       Impact factor: 3.116

10.  Quantitative Interpretation of Solvent Paramagnetic Relaxation for Probing Protein-Cosolute Interactions.

Authors:  Yusuke Okuno; Attila Szabo; G Marius Clore
Journal:  J Am Chem Soc       Date:  2020-04-24       Impact factor: 15.419

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