Literature DB >> 25761782

Protein structural dynamics at the gas/water interface examined by hydrogen exchange mass spectrometry.

Yiming Xiao1, Lars Konermann1.   

Abstract

Gas/water interfaces (such as air bubbles or foam) are detrimental to the stability of proteins, often causing aggregation. This represents a potential problem for industrial processes, for example, the production and handling of protein drugs. Proteins possess surfactant-like properties, resulting in a high affinity for gas/water interfaces. The tendency of previously buried nonpolar residues to maximize contact with the gas phase can cause significant structural distortion. Most earlier studies in this area employed spectroscopic tools that could only provide limited information. Here we use hydrogen/deuterium exchange (HDX) mass spectrometry (MS) for probing the conformational dynamics of the model protein myoglobin (Mb) in the presence of N(2) bubbles. HDX/MS relies on the principle that unfolded and/or highly dynamic regions undergo faster deuteration than tightly folded segments. In bubble-free solution Mb displays EX2 behavior, reflecting the occurrence of short-lived excursions to partially unfolded conformers. A dramatically different behavior is seen in the presence of N(2) bubbles; EX2 dynamics still take place, but in addition the protein shows EX1 behavior. The latter results from interconversion of the native state with conformers that are globally unfolded and long-lived. These unfolded species likely correspond to Mb that is adsorbed to the surface of gas bubbles. N(2) sparging also induces aggregation. To explain the observed behavior we propose a simple model, that is, "semi-unfolded" ↔ "native" ↔ "globally unfolded" → "aggregated". This model quantitatively reproduces the experimentally observed kinetics. To the best of our knowledge, the current study marks the first exploration of surface denaturation phenomena by HDX/MS.
© 2015 The Protein Society.

Entities:  

Keywords:  EX1; EX2; protein aggregation; protein dynamics; surface adsorption

Mesh:

Substances:

Year:  2015        PMID: 25761782      PMCID: PMC4534175          DOI: 10.1002/pro.2680

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  51 in total

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Journal:  Anal Chim Acta       Date:  2012-01-31       Impact factor: 6.558

Review 2.  Effects of shear on proteins in solution.

Authors:  C R Thomas; D Geer
Journal:  Biotechnol Lett       Date:  2010-11-18       Impact factor: 2.461

3.  Identification and characterization of EX1 kinetics in H/D exchange mass spectrometry by peak width analysis.

Authors:  David D Weis; Thomas E Wales; John R Engen; Matthew Hotchko; Lynn F Ten Eyck
Journal:  J Am Soc Mass Spectrom       Date:  2006-07-27       Impact factor: 3.109

4.  Thermal denaturation of Escherichia coli thioredoxin studied by hydrogen/deuterium exchange and electrospray ionization mass spectrometry: monitoring a two-state protein unfolding transition.

Authors:  C S Maier; M I Schimerlik; M L Deinzer
Journal:  Biochemistry       Date:  1999-01-19       Impact factor: 3.162

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Authors:  A Miranker; C V Robinson; S E Radford; C M Dobson
Journal:  FASEB J       Date:  1996-01       Impact factor: 5.191

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Journal:  Biotechnol Bioeng       Date:  1979-12       Impact factor: 4.530

7.  Early days of protein hydrogen exchange: 1954-1972.

Authors:  Robert L Baldwin
Journal:  Proteins       Date:  2011-05-09

8.  Ion-ion and ion-molecule reactions at the surface of proteins produced by nanospray. Information on the number of acidic residues and control of the number of ionized acidic and basic residues.

Authors:  Udo H Verkerk; Paul Kebarle
Journal:  J Am Soc Mass Spectrom       Date:  2005-08       Impact factor: 3.109

9.  Chemical denaturants inhibit the onset of dewetting.

Authors:  Jeremy L England; Vijay S Pande; Gilad Haran
Journal:  J Am Chem Soc       Date:  2008-08-16       Impact factor: 15.419

10.  Effects of ammonium bicarbonate on the electrospray mass spectra of proteins: evidence for bubble-induced unfolding.

Authors:  Jason B Hedges; Siavash Vahidi; Xuanfeng Yue; Lars Konermann
Journal:  Anal Chem       Date:  2013-06-18       Impact factor: 6.986

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  1 in total

Review 1.  Interfacial Peptides as Affinity Modulating Agents of Protein-Protein Interactions.

Authors:  Pavel V Ershov; Yuri V Mezentsev; Alexis S Ivanov
Journal:  Biomolecules       Date:  2022-01-08
  1 in total

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