Literature DB >> 18703160

Do enthalpy and entropy distinguish first in class from best in class?

Ernesto Freire1.   

Abstract

A drug molecule should bind to its target with high affinity and selectivity. Because the binding affinity is a combined function of the binding enthalpy and the binding entropy, extremely high affinity requires that both terms contribute favorably to binding. The binding enthalpy, however, is notoriously more difficult to optimize than the binding entropy, a fact that has resulted in thermodynamically unbalanced molecules that do not achieve optimal potency. In fact, with current technologies, the enthalpic optimization of drug candidates may take years and only appear in second-generation products. Within that context, it is not surprising that structure/activity relationships (SARs) that explicitly incorporate the interplay between enthalpy and entropy and accelerate the optimization process are being developed and gaining popularity.

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Year:  2008        PMID: 18703160      PMCID: PMC2581116          DOI: 10.1016/j.drudis.2008.07.005

Source DB:  PubMed          Journal:  Drug Discov Today        ISSN: 1359-6446            Impact factor:   7.851


  26 in total

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Journal:  Biotechniques       Date:  2001-07       Impact factor: 1.993

2.  Structural stability of binding sites: consequences for binding affinity and allosteric effects.

Authors:  I Luque; E Freire
Journal:  Proteins       Date:  2000

Review 3.  Adaptive inhibitors of the HIV-1 protease.

Authors:  Hiroyasu Ohtaka; Ernesto Freire
Journal:  Prog Biophys Mol Biol       Date:  2005-06       Impact factor: 3.667

4.  Enthalpy-entropy compensation: a phantom or something useful?

Authors:  Evgeni B Starikov; Bengt Nordén
Journal:  J Phys Chem B       Date:  2007-11-29       Impact factor: 2.991

5.  Compensating enthalpic and entropic changes hinder binding affinity optimization.

Authors:  Virginie Lafont; Anthony A Armstrong; Hiroyasu Ohtaka; Yoshiaki Kiso; L Mario Amzel; Ernesto Freire
Journal:  Chem Biol Drug Des       Date:  2007-06       Impact factor: 2.817

6.  Overcoming roadblocks in lead optimization: a thermodynamic perspective.

Authors:  Adam J Ruben; Yoshiaki Kiso; Ernesto Freire
Journal:  Chem Biol Drug Des       Date:  2006-01       Impact factor: 2.817

Review 7.  Calorimetry and thermodynamics in drug design.

Authors:  Jonathan B Chaires
Journal:  Annu Rev Biophys       Date:  2008       Impact factor: 12.981

8.  Isothermal titration calorimetry: controlling binding forces in lead optimization.

Authors:  Ernesto Freire
Journal:  Drug Discov Today Technol       Date:  2004-12

9.  Rapid measurement of binding constants and heats of binding using a new titration calorimeter.

Authors:  T Wiseman; S Williston; J F Brandts; L N Lin
Journal:  Anal Biochem       Date:  1989-05-15       Impact factor: 3.365

10.  Unique thermodynamic response of tipranavir to human immunodeficiency virus type 1 protease drug resistance mutations.

Authors:  S Muzammil; A A Armstrong; L W Kang; A Jakalian; P R Bonneau; V Schmelmer; L M Amzel; E Freire
Journal:  J Virol       Date:  2007-03-14       Impact factor: 5.103

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  107 in total

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Authors:  Gisbert Schneider
Journal:  Nat Rev Drug Discov       Date:  2010-04       Impact factor: 84.694

Review 2.  Finding a better path to drug selectivity.

Authors:  Yuko Kawasaki; Ernesto Freire
Journal:  Drug Discov Today       Date:  2011-08-02       Impact factor: 7.851

Review 3.  Thermodynamics of protein-ligand interactions as a reference for computational analysis: how to assess accuracy, reliability and relevance of experimental data.

Authors:  Stefan G Krimmer; Gerhard Klebe
Journal:  J Comput Aided Mol Des       Date:  2015-09-16       Impact factor: 3.686

4.  Thermodynamic Proxies to Compensate for Biases in Drug Discovery Methods.

Authors:  Sean Ekins; Nadia K Litterman; Christopher A Lipinski; Barry A Bunin
Journal:  Pharm Res       Date:  2015-08-27       Impact factor: 4.200

5.  Medicinal chemistry for 2020.

Authors:  Seetharama D Satyanarayanajois; Ronald A Hill
Journal:  Future Med Chem       Date:  2011-10       Impact factor: 3.808

6.  Some binding-related drug properties are dependent on thermodynamic signature.

Authors:  Arne Schön; Navid Madani; Amos B Smith; Judith M Lalonde; Ernesto Freire
Journal:  Chem Biol Drug Des       Date:  2011-02-02       Impact factor: 2.817

7.  Highly Potent, Chemically Stable Quorum Sensing Agonists for Vibrio Cholerae.

Authors:  Lark J Perez; Theodora K Karagounis; Amanda Hurley; Bonnie L Bassler; Martin F Semmelhack
Journal:  Chem Sci       Date:  2014-01-01       Impact factor: 9.825

8.  Tyrosine Kinase 2-mediated Signal Transduction in T Lymphocytes Is Blocked by Pharmacological Stabilization of Its Pseudokinase Domain.

Authors:  John S Tokarski; Adriana Zupa-Fernandez; Jeffrey A Tredup; Kristen Pike; ChiehYing Chang; Dianlin Xie; Lihong Cheng; Donna Pedicord; Jodi Muckelbauer; Stephen R Johnson; Sophie Wu; Suzanne C Edavettal; Yang Hong; Mark R Witmer; Lisa L Elkin; Yuval Blat; William J Pitts; David S Weinstein; James R Burke
Journal:  J Biol Chem       Date:  2015-03-11       Impact factor: 5.157

9.  Discovery of a Chiral DNA-Targeted Platinum-Acridine Agent with Potent Enantioselective Anticancer Activity.

Authors:  Shenjie Zhang; Xiyuan Yao; Noah H Watkins; P Keegan Rose; Sofia R Caruso; Cynthia S Day; Ulrich Bierbach
Journal:  Angew Chem Int Ed Engl       Date:  2020-09-29       Impact factor: 15.336

10.  Enthalpy screen of drug candidates.

Authors:  Arne Schön; Ernesto Freire
Journal:  Anal Biochem       Date:  2016-08-25       Impact factor: 3.365

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