Literature DB >> 18044870

Enthalpy-entropy compensation: a phantom or something useful?

Evgeni B Starikov1, Bengt Nordén.   

Abstract

In various chemical systems enthalpy-entropy compensation (EEC) is a well-known rule of behavior, although the physical roots of it are still not completely understood. It has been frequently questioned whether EEC is a truly physical phenomenon or a coincidence due to trivial mathematical connections between statistical-mechanical parameters or even simpler, a phantom effect resulting from the misinterpretation of experimental data. Here, we review EEC from a new standpoint and conclude that it may be rationalized in terms of hidden but physically real factors implying a Carnot-cycle model in which a micro-phase transition (MPT) plays a crucial role. Examples of such MPTs underlying physically valid EEC should be typically cooperative processes in supramolecular aggregates, like changes of structured water at hydrophobic surfaces, conformational transitions upon ligand-biopolymer binding, and so forth. The MPT notion could help rationalize the occurrence of EEC in connection with hydration and folding of proteins, functioning of molecular motors, and similar phenomena.

Entities:  

Year:  2007        PMID: 18044870     DOI: 10.1021/jp075784i

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  24 in total

1.  Biophysical basis of the promiscuous binding of B-cell lymphoma protein 2 apoptotic repressor to BH3 ligands.

Authors:  Vikas Bhat; Max B Olenick; Brett J Schuchardt; David C Mikles; Caleb B McDonald; Amjad Farooq
Journal:  J Mol Recognit       Date:  2013-10       Impact factor: 2.137

2.  Dissecting the role of leucine zippers in the binding of bZIP domains of Jun transcription factor to DNA.

Authors:  Kenneth L Seldeen; Caleb B McDonald; Brian J Deegan; Vikas Bhat; Amjad Farooq
Journal:  Biochem Biophys Res Commun       Date:  2010-03-21       Impact factor: 3.575

3.  Energetic coupling along an allosteric communication channel drives the binding of Jun-Fos heterodimeric transcription factor to DNA.

Authors:  Kenneth L Seldeen; Brian J Deegan; Vikas Bhat; David C Mikles; Caleb B McDonald; Amjad Farooq
Journal:  FEBS J       Date:  2011-05-18       Impact factor: 5.542

4.  Mechanistic role of movement and strain sensitivity in muscle contraction.

Authors:  Julien S Davis; Neal D Epstein
Journal:  Proc Natl Acad Sci U S A       Date:  2009-03-26       Impact factor: 11.205

5.  Role of promoter DNA sequence variations on the binding of EGR1 transcription factor.

Authors:  David C Mikles; Brett J Schuchardt; Vikas Bhat; Caleb B McDonald; Amjad Farooq
Journal:  Arch Biochem Biophys       Date:  2014-03-18       Impact factor: 4.013

6.  A detailed thermodynamic profile of cyclopentyl and isopropyl derivatives binding to CK2 kinase.

Authors:  Takayoshi Kinoshita; Yusuke Sekiguchi; Harumi Fukada; Tetsuko Nakaniwa; Toshiji Tada; Shinya Nakamura; Kazuo Kitaura; Hiroaki Ohno; Yamato Suzuki; Akira Hirasawa; Isao Nakanishi; Gozoh Tsujimoto
Journal:  Mol Cell Biochem       Date:  2011-07-07       Impact factor: 3.396

7.  Entropy-enthalpy transduction caused by conformational shifts can obscure the forces driving protein-ligand binding.

Authors:  Andrew T Fenley; Hari S Muddana; Michael K Gilson
Journal:  Proc Natl Acad Sci U S A       Date:  2012-11-13       Impact factor: 11.205

Review 8.  Entropy-enthalpy compensation: role and ramifications in biomolecular ligand recognition and design.

Authors:  John D Chodera; David L Mobley
Journal:  Annu Rev Biophys       Date:  2013       Impact factor: 12.981

9.  Binding of the ERalpha nuclear receptor to DNA is coupled to proton uptake.

Authors:  Brian J Deegan; Kenneth L Seldeen; Caleb B McDonald; Vikas Bhat; Amjad Farooq
Journal:  Biochemistry       Date:  2010-07-27       Impact factor: 3.162

10.  pH modulates the binding of early growth response protein 1 transcription factor to DNA.

Authors:  David C Mikles; Vikas Bhat; Brett J Schuchardt; Brian J Deegan; Kenneth L Seldeen; Caleb B McDonald; Amjad Farooq
Journal:  FEBS J       Date:  2013-06-18       Impact factor: 5.542

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