Literature DB >> 20442006

Modeling spectral tuning in monomeric teal fluorescent protein mTFP1.

Igor Topol1, Jack Collins, Alexander Nemukhin.   

Abstract

We present results of theoretical studies of the variants of the monomeric teal fluorescent protein from Clavularia coral (mTFP1) which present promising members from the GFP family. Predictions of quantum chemical approaches including density functional theory and semiempirical approximations are presented for the model systems which mimic the chromophores in different environments. We describe the excitation energy spectrum of the cyan mTFP1 fluorescent protein with the original chromophore and with chromophore mutants Tyr67His and Tyr67Trp. Copyright 2010 Elsevier B.V. All rights reserved.

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Year:  2010        PMID: 20442006      PMCID: PMC2875285          DOI: 10.1016/j.bpc.2010.04.002

Source DB:  PubMed          Journal:  Biophys Chem        ISSN: 0301-4622            Impact factor:   2.352


  11 in total

Review 1.  Green fluorescent protein (GFP): applications, structure, and related photophysical behavior.

Authors:  Marc Zimmer
Journal:  Chem Rev       Date:  2002-03       Impact factor: 60.622

2.  Crystal structures and mutational analysis of amFP486, a cyan fluorescent protein from Anemonia majano.

Authors:  J Nathan Henderson; S James Remington
Journal:  Proc Natl Acad Sci U S A       Date:  2005-08-24       Impact factor: 11.205

3.  Photoabsorption of green and red fluorescent protein chromophore anions in vacuo.

Authors:  Songbo Wan; Shasha Liu; Guangjiu Zhao; Maodu Chen; Keli Han; Mengtao Sun
Journal:  Biophys Chem       Date:  2007-06-14       Impact factor: 2.352

Review 4.  Fluorescent proteins as biomarkers and biosensors: throwing color lights on molecular and cellular processes.

Authors:  Olesya V Stepanenko; Vladislav V Verkhusha; Irina M Kuznetsova; Vladimir N Uversky; K K Turoverov
Journal:  Curr Protein Pept Sci       Date:  2008-08       Impact factor: 3.272

5.  On photoabsorption of the neutral form of the green fluorescent protein chromophore.

Authors:  Igor Topol; Jack Collins; Igor Polyakov; Bella Grigorenko; Alexander Nemukhin
Journal:  Biophys Chem       Date:  2009-08-14       Impact factor: 2.352

Review 6.  The green fluorescent protein.

Authors:  R Y Tsien
Journal:  Annu Rev Biochem       Date:  1998       Impact factor: 23.643

7.  Directed evolution of a monomeric, bright and photostable version of Clavularia cyan fluorescent protein: structural characterization and applications in fluorescence imaging.

Authors:  Hui-wang Ai; J Nathan Henderson; S James Remington; Robert E Campbell
Journal:  Biochem J       Date:  2006-12-15       Impact factor: 3.857

8.  Crystal structure and photodynamic behavior of the blue emission variant Y66H/Y145F of green fluorescent protein.

Authors:  R M Wachter; B A King; R Heim; K Kallio; R Y Tsien; S G Boxer; S J Remington
Journal:  Biochemistry       Date:  1997-08-12       Impact factor: 3.162

9.  Excited states of GFP chromophore and active site studied by the SAC-CI method: effect of protein-environment and mutations.

Authors:  Jun-Ya Hasegawa; Kazuhiro Fujimoto; Ben Swerts; Tomoo Miyahara; Hiroshi Nakatsuji
Journal:  J Comput Chem       Date:  2007-11-30       Impact factor: 3.376

10.  Computer modeling of the structure and spectra of fluorescent proteins.

Authors:  A V Nemukhin; B L Grigorenko; A P Savitsky
Journal:  Acta Naturae       Date:  2009-07       Impact factor: 1.845

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  3 in total

1.  Estimating orientation factors in the FRET theory of fluorescent proteins: the TagRFP-KFP pair and beyond.

Authors:  Maria Khrenova; Igor Topol; Jack Collins; Alexander Nemukhin
Journal:  Biophys J       Date:  2015-01-06       Impact factor: 4.033

2.  Lysosome sorting of β-glucocerebrosidase by LIMP-2 is targeted by the mannose 6-phosphate receptor.

Authors:  Yuguang Zhao; Jingshan Ren; Sergi Padilla-Parra; Elizabeth E Fry; David I Stuart
Journal:  Nat Commun       Date:  2014-07-14       Impact factor: 14.919

3.  Long- and Short-Range Electrostatic Fields in GFP Mutants: Implications for Spectral Tuning.

Authors:  M Drobizhev; P R Callis; R Nifosì; G Wicks; C Stoltzfus; L Barnett; T E Hughes; P Sullivan; A Rebane
Journal:  Sci Rep       Date:  2015-08-19       Impact factor: 4.379

  3 in total

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