Literature DB >> 18689541

The role of the polycomb complex in silencing alpha-globin gene expression in nonerythroid cells.

David Garrick1, Marco De Gobbi, Vasiliki Samara, Michelle Rugless, Michelle Holland, Helena Ayyub, Karen Lower, Jackie Sloane-Stanley, Nicki Gray, Christoph Koch, Ian Dunham, Douglas R Higgs.   

Abstract

Although much is known about globin gene activation in erythroid cells, relatively little is known about how these genes are silenced in nonerythroid tissues. Here we show that the human alpha- and beta-globin genes are silenced by fundamentally different mechanisms. The alpha-genes, which are surrounded by widely expressed genes in a gene dense region of the genome, are silenced very early in development via recruitment of the Polycomb (PcG) complex. By contrast, the beta-globin genes, which lie in a relatively gene-poor chromosomal region, are not bound by this complex in nonerythroid cells. The PcG complex seems to be recruited to the alpha-cluster by sequences within the CpG islands associated with their promoters; the beta-globin promoters do not lie within such islands. Chromatin associated with the alpha-globin cluster is modified by histone methylation (H3K27me3), and silencing in vivo is mediated by the localized activity of histone deacetylases (HDACs). The repressive (PcG/HDAC) machinery is removed as hematopoietic progenitors differentiate to form erythroid cells. The alpha- and beta-globin genes thus illustrate important, contrasting mechanisms by which cell-specific hematopoietic genes (and tissue-specific genes in general) may be silenced.

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Year:  2008        PMID: 18689541      PMCID: PMC2572806          DOI: 10.1182/blood-2008-06-161901

Source DB:  PubMed          Journal:  Blood        ISSN: 0006-4971            Impact factor:   22.113


  33 in total

1.  alpha-thalassemia resulting from a negative chromosomal position effect.

Authors:  V M Barbour; C Tufarelli; J A Sharpe; Z E Smith; H Ayyub; C A Heinlein; J Sloane-Stanley; K Indrak; W G Wood; D R Higgs
Journal:  Blood       Date:  2000-08-01       Impact factor: 22.113

2.  Polycomb complexes repress developmental regulators in murine embryonic stem cells.

Authors:  Laurie A Boyer; Kathrin Plath; Julia Zeitlinger; Tobias Brambrink; Lea A Medeiros; Tong Ihn Lee; Stuart S Levine; Marius Wernig; Adriana Tajonar; Mridula K Ray; George W Bell; Arie P Otte; Miguel Vidal; David K Gifford; Richard A Young; Rudolf Jaenisch
Journal:  Nature       Date:  2006-04-19       Impact factor: 49.962

3.  How transcriptional and epigenetic programmes are played out on an individual mammalian gene cluster during lineage commitment and differentiation.

Authors:  Douglas R Higgs; Douglas Vernimmen; Marco De Gobbi; Eduardo Anguita; Jim Hughes; Veronica Buckle; Franciso Iborra; David Garrick; William G Wood
Journal:  Biochem Soc Symp       Date:  2006

4.  Control of developmental regulators by Polycomb in human embryonic stem cells.

Authors:  Tong Ihn Lee; Richard G Jenner; Laurie A Boyer; Matthew G Guenther; Stuart S Levine; Roshan M Kumar; Brett Chevalier; Sarah E Johnstone; Megan F Cole; Kyo-ichi Isono; Haruhiko Koseki; Takuya Fuchikami; Kuniya Abe; Heather L Murray; Jacob P Zucker; Bingbing Yuan; George W Bell; Elizabeth Herbolsheimer; Nancy M Hannett; Kaiming Sun; Duncan T Odom; Arie P Otte; Thomas L Volkert; David P Bartel; Douglas A Melton; David K Gifford; Rudolf Jaenisch; Richard A Young
Journal:  Cell       Date:  2006-04-21       Impact factor: 41.582

5.  The genomic landscape of histone modifications in human T cells.

Authors:  Tae-Young Roh; Suresh Cuddapah; Kairong Cui; Keji Zhao
Journal:  Proc Natl Acad Sci U S A       Date:  2006-10-16       Impact factor: 11.205

Review 6.  Polycomb silencers control cell fate, development and cancer.

Authors:  Anke Sparmann; Maarten van Lohuizen
Journal:  Nat Rev Cancer       Date:  2006-11       Impact factor: 60.716

7.  Hyperconserved CpG domains underlie Polycomb-binding sites.

Authors:  Amos Tanay; Anne H O'Donnell; Marc Damelin; Timothy H Bestor
Journal:  Proc Natl Acad Sci U S A       Date:  2007-03-21       Impact factor: 11.205

8.  Transcriptional repression mediated by the human polycomb-group protein EED involves histone deacetylation.

Authors:  J van der Vlag; A P Otte
Journal:  Nat Genet       Date:  1999-12       Impact factor: 38.330

9.  Tissue-specific histone modification and transcription factor binding in alpha globin gene expression.

Authors:  Marco De Gobbi; Eduardo Anguita; Jim Hughes; Jacqueline A Sloane-Stanley; Jacqueline A Sharpe; Christoph M Koch; Ian Dunham; Richard J Gibbons; William G Wood; Douglas R Higgs
Journal:  Blood       Date:  2007-08-22       Impact factor: 22.113

10.  A regulatory SNP causes a human genetic disease by creating a new transcriptional promoter.

Authors:  Marco De Gobbi; Vip Viprakasit; Jim R Hughes; Chris Fisher; Veronica J Buckle; Helena Ayyub; Richard J Gibbons; Douglas Vernimmen; Yuko Yoshinaga; Pieter de Jong; Jan-Fang Cheng; Edward M Rubin; William G Wood; Don Bowden; Douglas R Higgs
Journal:  Science       Date:  2006-05-26       Impact factor: 47.728

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  27 in total

1.  H3K27me3 forms BLOCs over silent genes and intergenic regions and specifies a histone banding pattern on a mouse autosomal chromosome.

Authors:  Florian M Pauler; Mathew A Sloane; Ru Huang; Kakkad Regha; Martha V Koerner; Ido Tamir; Andreas Sommer; Andras Aszodi; Thomas Jenuwein; Denise P Barlow
Journal:  Genome Res       Date:  2008-12-01       Impact factor: 9.043

Review 2.  Chromosome crosstalk in three dimensions.

Authors:  Anita Göndör; Rolf Ohlsson
Journal:  Nature       Date:  2009-09-10       Impact factor: 49.962

3.  Histone code pathway involving H3 S28 phosphorylation and K27 acetylation activates transcription and antagonizes polycomb silencing.

Authors:  Priscilla Nga Ieng Lau; Peter Cheung
Journal:  Proc Natl Acad Sci U S A       Date:  2011-01-31       Impact factor: 11.205

4.  Polycomb eviction as a new distant enhancer function.

Authors:  Douglas Vernimmen; Magnus D Lynch; Marco De Gobbi; David Garrick; Jacqueline A Sharpe; Jacqueline A Sloane-Stanley; Andrew J H Smith; Douglas R Higgs
Journal:  Genes Dev       Date:  2011-08-01       Impact factor: 11.361

5.  The molecular basis of α-thalassemia.

Authors:  Douglas R Higgs
Journal:  Cold Spring Harb Perspect Med       Date:  2013-01-01       Impact factor: 6.915

Review 6.  Disruption of long-range gene regulation in human genetic disease: a kaleidoscope of general principles, diverse mechanisms and unique phenotypic consequences.

Authors:  Shipra Bhatia; Dirk A Kleinjan
Journal:  Hum Genet       Date:  2014-02-05       Impact factor: 4.132

7.  Long-term exposure of K562 cells to benzene metabolites inhibited erythroid differentiation and elevated methylation in erythroid specific genes.

Authors:  K Y Tang; C H Yu; L Jiang; M Gong; W J Liu; Y Wang; N X Cui; W Song; Y Sun; Z C Yi
Journal:  Toxicol Res (Camb)       Date:  2016-06-30       Impact factor: 3.524

8.  DNA methylation of intragenic CpG islands depends on their transcriptional activity during differentiation and disease.

Authors:  Danuta M Jeziorska; Robert J S Murray; Marco De Gobbi; Ricarda Gaentzsch; David Garrick; Helena Ayyub; Taiping Chen; En Li; Jelena Telenius; Magnus Lynch; Bryony Graham; Andrew J H Smith; Jonathan N Lund; Jim R Hughes; Douglas R Higgs; Cristina Tufarelli
Journal:  Proc Natl Acad Sci U S A       Date:  2017-08-21       Impact factor: 11.205

9.  The role of EZH2 and DNA methylation in the silencing of the tumour suppressor RUNX3 in colorectal cancer.

Authors:  Liudmila L Kodach; Rutger J Jacobs; Jarom Heijmans; Carel J M van Noesel; Alexandra M J Langers; Hein W Verspaget; Daniel W Hommes; G Johan A Offerhaus; Gijs R van den Brink; James C H Hardwick
Journal:  Carcinogenesis       Date:  2010-07-14       Impact factor: 4.944

10.  Epigenetic signatures associated with different levels of differentiation potential in human stem cells.

Authors:  Pablo Aranda; Xabier Agirre; Esteban Ballestar; Enrique J Andreu; José Román-Gómez; Inés Prieto; José Ignacio Martín-Subero; Juan Cruz Cigudosa; Reiner Siebert; Manel Esteller; Felipe Prosper
Journal:  PLoS One       Date:  2009-11-13       Impact factor: 3.240

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