Literature DB >> 18688728

Prospects for lanthanides in structural biology by NMR.

Gottfried Otting1.   

Abstract

The advent of different lanthanide-binding reagents has made site-specific labelling of proteins with paramagnetic lanthanides a viable proposition. This brings many powerful techniques originally established and demonstrated for paramagnetic metalloproteins into the mainstream of structural biology. The promise is that, by exploiting the long-range effects of paramagnetism, lanthanide labelling will allow the study of larger proteins and protein-ligand complexes with greater ease and accuracy than hitherto possible. In particular, lanthanide-induced pseudocontact shifts (PCS) provide powerful restraints and 3D structure determination using PCS as the only source of experimental restraints will probably be possible with data obtained from samples with different lanthanide-tagging sites. Cell-free protein synthesis is positioned to play an important role in this strategy, as an inexpensive source of selectively labelled protein samples and for easy site-specific incorporation of unnatural lanthanide-binding amino acids.

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Year:  2008        PMID: 18688728     DOI: 10.1007/s10858-008-9256-0

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  48 in total

1.  Cross correlation between the dipole-dipole interaction and the Curie spin relaxation: the effect of anisotropic magnetic susceptibility.

Authors:  I Bertini; J Kowalewski; C Luchinat; G Parigi
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2.  NMR analysis of a 900K GroEL GroES complex.

Authors:  Jocelyne Fiaux; Eric B Bertelsen; Arthur L Horwich; Kurt Wüthrich
Journal:  Nature       Date:  2002-07-11       Impact factor: 49.962

Review 3.  Expanding the genetic code.

Authors:  Lei Wang; Jianming Xie; Peter G Schultz
Journal:  Annu Rev Biophys Biomol Struct       Date:  2006

Review 4.  Paramagnetic tagging of diamagnetic proteins for solution NMR.

Authors:  Fernando Rodriguez-Castañeda; Peter Haberz; Andrei Leonov; Christian Griesinger
Journal:  Magn Reson Chem       Date:  2006-07       Impact factor: 2.447

5.  Convenient synthesis of multifunctional EDTA-based chiral metal chelates substituted with an S-mesylcysteine.

Authors:  Andrei Leonov; Brigitte Voigt; Fernando Rodriguez-Castañeda; Peyman Sakhaii; Christian Griesinger
Journal:  Chemistry       Date:  2005-05-20       Impact factor: 5.236

6.  Quantitative determination of mononucleotide conformations in solution using lanthanide ion shift and broadenine NMR probes.

Authors:  C D Barry; A C North; J A Glasel; R J Williams; A V Xavier
Journal:  Nature       Date:  1971-07-23       Impact factor: 49.962

7.  NMR analysis of in vitro-synthesized proteins without purification: a high-throughput approach.

Authors:  Laurent Guignard; Kiyoshi Ozawa; Sharon E Pursglove; Gottfried Otting; Nicholas E Dixon
Journal:  FEBS Lett       Date:  2002-07-31       Impact factor: 4.124

8.  Use of lanthanide-induced nuclear magnetic resonance shifts for determination of protein structure in solution: EF calcium binding site of carp parvalbumin.

Authors:  L Lee; B D Sykes
Journal:  Biochemistry       Date:  1983-09-13       Impact factor: 3.162

9.  Fast structure-based assignment of 15N HSQC spectra of selectively 15N-labeled paramagnetic proteins.

Authors:  Guido Pintacuda; Max A Keniry; Thomas Huber; Ah Young Park; Nicholas E Dixon; Gottfried Otting
Journal:  J Am Chem Soc       Date:  2004-03-10       Impact factor: 15.419

10.  Novel techniques for weak alignment of proteins in solution using chemical tags coordinating lanthanide ions.

Authors:  Takahisa Ikegami; Laurent Verdier; Peyman Sakhaii; Susanne Grimme; Barbara Pescatore; Krishna Saxena; Klaus M Fiebig; Christian Griesinger
Journal:  J Biomol NMR       Date:  2004-07       Impact factor: 2.835

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  37 in total

Review 1.  Alternatives to gadolinium-based metal chelates for magnetic resonance imaging.

Authors:  Subha Viswanathan; Zoltan Kovacs; Kayla N Green; S James Ratnakar; A Dean Sherry
Journal:  Chem Rev       Date:  2010-05-12       Impact factor: 60.622

2.  Electron-nuclear interactions as probes of domain motion in proteins.

Authors:  Boaz Shapira; James H Prestegard
Journal:  J Chem Phys       Date:  2010-03-21       Impact factor: 3.488

3.  Recent Advances in the Application of Solution NMR Spectroscopy to Multi-Span Integral Membrane Proteins.

Authors:  Hak Jun Kim; Stanley C Howell; Wade D Van Horn; Young Ho Jeon; Charles R Sanders
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2009-11-01       Impact factor: 9.795

4.  Engineering encodable lanthanide-binding tags into loop regions of proteins.

Authors:  Katja Barthelmes; Anne M Reynolds; Ezra Peisach; Hendrik R A Jonker; Nicholas J DeNunzio; Karen N Allen; Barbara Imperiali; Harald Schwalbe
Journal:  J Am Chem Soc       Date:  2011-02-02       Impact factor: 15.419

5.  Two-point anchoring of a lanthanide-binding peptide to a target protein enhances the paramagnetic anisotropic effect.

Authors:  Tomohide Saio; Kenji Ogura; Masashi Yokochi; Yoshihiro Kobashigawa; Fuyuhiko Inagaki
Journal:  J Biomol NMR       Date:  2009-05-26       Impact factor: 2.835

Review 6.  An introduction to biological NMR spectroscopy.

Authors:  Dominique Marion
Journal:  Mol Cell Proteomics       Date:  2013-07-06       Impact factor: 5.911

Review 7.  Site-specific labeling of proteins with NMR-active unnatural amino acids.

Authors:  David H Jones; Susan E Cellitti; Xueshi Hao; Qiong Zhang; Michael Jahnz; Daniel Summerer; Peter G Schultz; Tetsuo Uno; Bernhard H Geierstanger
Journal:  J Biomol NMR       Date:  2009-08-09       Impact factor: 2.835

Review 8.  Paramagnetic labelling of proteins and oligonucleotides for NMR.

Authors:  Xun-Cheng Su; Gottfried Otting
Journal:  J Biomol NMR       Date:  2009-06-16       Impact factor: 2.835

Review 9.  Paramagnetic NMR probes for characterization of the dynamic conformations and interactions of oligosaccharides.

Authors:  Koichi Kato; Takumi Yamaguchi
Journal:  Glycoconj J       Date:  2015-06-07       Impact factor: 2.916

10.  A minor conformation of a lanthanide tag on adenylate kinase characterized by paramagnetic relaxation dispersion NMR spectroscopy.

Authors:  Mathias A S Hass; Wei-Min Liu; Roman V Agafonov; Renee Otten; Lien A Phung; Jesika T Schilder; Dorothee Kern; Marcellus Ubbink
Journal:  J Biomol NMR       Date:  2015-01-08       Impact factor: 2.835

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