Literature DB >> 15703442

Processing bodies require RNA for assembly and contain nontranslating mRNAs.

Daniela Teixeira1, Ujwal Sheth, Marco A Valencia-Sanchez, Muriel Brengues, Roy Parker.   

Abstract

Recent experiments have defined cytoplasmic foci, referred to as processing bodies (P-bodies), wherein mRNA decay factors are concentrated and where mRNA decay can occur. However, the physical nature of P-bodies, their relationship to translation, and possible roles of P-bodies in cellular responses remain unclear. We describe four properties of yeast P-bodies that indicate that P-bodies are dynamic structures that contain nontranslating mRNAs and function during cellular responses to stress. First, in vivo and in vitro analysis indicates that P-bodies are dependent on RNA for their formation. Second, the number and size of P-bodies vary in response to glucose deprivation, osmotic stress, exposure to ultraviolet light, and the stage of cell growth. Third, P-bodies vary with the status of the cellular translation machinery. Inhibition of translation initiation by mutations, or cellular stress, results in increased P-bodies. In contrast, inhibition of translation elongation, thereby trapping the mRNA in polysomes, leads to dissociation of P-bodies. Fourth, multiple translation factors and ribosomal proteins are lacking from P-bodies. These results suggest additional biological roles of P-bodies in addition to being sites of mRNA degradation.

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Year:  2005        PMID: 15703442      PMCID: PMC1370727          DOI: 10.1261/rna.7258505

Source DB:  PubMed          Journal:  RNA        ISSN: 1355-8382            Impact factor:   4.942


  46 in total

1.  Evidence that ternary complex (eIF2-GTP-tRNA(i)(Met))-deficient preinitiation complexes are core constituents of mammalian stress granules.

Authors:  Nancy Kedersha; Samantha Chen; Natalie Gilks; Wei Li; Ira J Miller; Joachim Stahl; Paul Anderson
Journal:  Mol Biol Cell       Date:  2002-01       Impact factor: 4.138

2.  Defects in the mRNA export factors Rat7p, Gle1p, Mex67p, and Rat8p cause hyperadenylation during 3'-end formation of nascent transcripts.

Authors:  P Hilleren; R Parker
Journal:  RNA       Date:  2001-05       Impact factor: 4.942

3.  Stress granule assembly is mediated by prion-like aggregation of TIA-1.

Authors:  Natalie Gilks; Nancy Kedersha; Maranatha Ayodele; Lily Shen; Georg Stoecklin; Laura M Dember; Paul Anderson
Journal:  Mol Biol Cell       Date:  2004-09-15       Impact factor: 4.138

4.  Transient inhibition of translation initiation by osmotic stress.

Authors:  Yukifumi Uesono; Akio Toh-E
Journal:  J Biol Chem       Date:  2002-01-16       Impact factor: 5.157

5.  Mutations in translation initiation factors lead to increased rates of deadenylation and decapping of mRNAs in Saccharomyces cerevisiae.

Authors:  D C Schwartz; R Parker
Journal:  Mol Cell Biol       Date:  1999-08       Impact factor: 4.272

6.  Simultaneous yet independent regulation of actin cytoskeletal organization and translation initiation by glucose in Saccharomyces cerevisiae.

Authors:  Yukifumi Uesono; Mark P Ashe; Akio Toh-E
Journal:  Mol Biol Cell       Date:  2004-01-23       Impact factor: 4.138

7.  A mutation in the tRNA nucleotidyltransferase gene promotes stabilization of mRNAs in Saccharomyces cerevisiae.

Authors:  S W Peltz; J L Donahue; A Jacobson
Journal:  Mol Cell Biol       Date:  1992-12       Impact factor: 4.272

8.  Mutational analysis of the Prt1 protein subunit of yeast translation initiation factor 3.

Authors:  D R Evans; C Rasmussen; P J Hanic-Joyce; G C Johnston; R A Singer; C A Barnes
Journal:  Mol Cell Biol       Date:  1995-08       Impact factor: 4.272

9.  Stressful initiations.

Authors:  Paul Anderson; Nancy Kedersha
Journal:  J Cell Sci       Date:  2002-08-15       Impact factor: 5.285

10.  RNA-binding proteins TIA-1 and TIAR link the phosphorylation of eIF-2 alpha to the assembly of mammalian stress granules.

Authors:  N L Kedersha; M Gupta; W Li; I Miller; P Anderson
Journal:  J Cell Biol       Date:  1999-12-27       Impact factor: 10.539

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  331 in total

1.  RNA-binding protein L1TD1 interacts with LIN28 via RNA and is required for human embryonic stem cell self-renewal and cancer cell proliferation.

Authors:  Elisa Närvä; Nelly Rahkonen; Maheswara Reddy Emani; Riikka Lund; Juha-Pekka Pursiheimo; Juuso Nästi; Reija Autio; Omid Rasool; Konstantin Denessiouk; Harri Lähdesmäki; Anjana Rao; Riitta Lahesmaa
Journal:  Stem Cells       Date:  2012-03       Impact factor: 6.277

Review 2.  New insights into the regulation of RNP granule assembly in oocytes.

Authors:  Jennifer A Schisa
Journal:  Int Rev Cell Mol Biol       Date:  2012       Impact factor: 6.813

Review 3.  P-bodies and stress granules: possible roles in the control of translation and mRNA degradation.

Authors:  Carolyn J Decker; Roy Parker
Journal:  Cold Spring Harb Perspect Biol       Date:  2012-09-01       Impact factor: 10.005

4.  LIM-domain proteins, LIMD1, Ajuba, and WTIP are required for microRNA-mediated gene silencing.

Authors:  Victoria James; Yining Zhang; Daniel E Foxler; Cornelia H de Moor; Yi Wen Kong; Thomas M Webb; Tim J Self; Yungfeng Feng; Dimitrios Lagos; Chia-Ying Chu; Tariq M Rana; Simon J Morley; Gregory D Longmore; Martin Bushell; Tyson V Sharp
Journal:  Proc Natl Acad Sci U S A       Date:  2010-06-28       Impact factor: 11.205

5.  A quantitative inventory of yeast P body proteins reveals principles of composition and specificity.

Authors:  Wenmin Xing; Denise Muhlrad; Roy Parker; Michael K Rosen
Journal:  Elife       Date:  2020-06-19       Impact factor: 8.140

Review 6.  Current perspectives on the clinical implications of oxidative RNA damage in aging research: challenges and opportunities.

Authors:  Zhijie Xu; Jinzhou Huang; Ming Gao; Guijie Guo; Shuangshuang Zeng; Xi Chen; Xiang Wang; Zhicheng Gong; Yuanliang Yan
Journal:  Geroscience       Date:  2020-06-11       Impact factor: 7.713

Review 7.  The Role of RNA in Biological Phase Separations.

Authors:  Marta M Fay; Paul J Anderson
Journal:  J Mol Biol       Date:  2018-05-10       Impact factor: 5.469

Review 8.  Effects of stress and aging on ribonucleoprotein assembly and function in the germ line.

Authors:  Jennifer A Schisa
Journal:  Wiley Interdiscip Rev RNA       Date:  2013-11-13       Impact factor: 9.957

9.  The conserved P body component HPat/Pat1 negatively regulates synaptic terminal growth at the larval Drosophila neuromuscular junction.

Authors:  Sarala J Pradhan; Katherine R Nesler; Sarah F Rosen; Yasuko Kato; Akira Nakamura; Mani Ramaswami; Scott A Barbee
Journal:  J Cell Sci       Date:  2012-10-24       Impact factor: 5.285

10.  Accumulation of polyadenylated mRNA, Pab1p, eIF4E, and eIF4G with P-bodies in Saccharomyces cerevisiae.

Authors:  Muriel Brengues; Roy Parker
Journal:  Mol Biol Cell       Date:  2007-05-02       Impact factor: 4.138

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