Literature DB >> 18636340

Compositional inheritance: comparison of self-assembly and catalysis.

Meng Wu1, Paul G Higgs.   

Abstract

Genetic inheritance in modern cells is due to template-directed replication of nucleic acids. However, the difficulty of prebiotic synthesis of long information-carrying polymers like RNA raises the question of whether some other form of heredity is possible without polymers. As an alternative, the lipid world theory has been proposed, which considers non-covalent assemblies of lipids, such as micelles and vesicles. Assemblies store information in the form of a non-random molecular composition, and this information is passed on when the assemblies divide, i.e. the assemblies show compositional inheritance. Here, we vary several important assumptions of previous lipid world models and show that compositional inheritance is relevant more generally than the context in which it was originally proposed. Our models assume that interaction occurs between nearest neighbour molecules only, and account for spatial segregation of molecules of different types within the assembly. We also draw a distinction between a self-assembly model, in which the composition is determined by mutually favourable interaction energies between the molecules, and a catalytic model, in which the composition is determined by mutually favourable catalysis. We show that compositional inheritance occurs in both models, although the self-assembly case seems more relevant if the molecules are simple lipids. In the case where the assemblies are composed of just two types of molecules, there is a strong analogy with the classic two-allele Moran model from population genetics. This highlights the parallel between compositional inheritance and genetic inheritance.

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Year:  2008        PMID: 18636340     DOI: 10.1007/s11084-008-9143-4

Source DB:  PubMed          Journal:  Orig Life Evol Biosph        ISSN: 0169-6149            Impact factor:   1.950


  27 in total

1.  Graded Autocatalysis Replication Domain (GARD): kinetic analysis of self-replication in mutually catalytic sets.

Authors:  D Segre; D Lancet; O Kedem; Y Pilpel
Journal:  Orig Life Evol Biosph       Date:  1998-10       Impact factor: 1.950

2.  The molecular roots of compositional inheritance.

Authors:  D Segré; B Shenhav; R Kafri; D Lancet
Journal:  J Theor Biol       Date:  2001-12-07       Impact factor: 2.691

3.  RNA-catalyzed RNA polymerization: accurate and general RNA-templated primer extension.

Authors:  W K Johnston; P J Unrau; M S Lawrence; M E Glasner; D P Bartel
Journal:  Science       Date:  2001-05-18       Impact factor: 47.728

4.  A relationship between membrane properties forms the basis of a selectivity mechanism for vesicle self-reproduction.

Authors:  B Bozic; S Svetina
Journal:  Eur Biophys J       Date:  2004-04-17       Impact factor: 1.733

Review 5.  Replicating vesicles as models of primitive cell growth and division.

Authors:  Martin M Hanczyc; Jack W Szostak
Journal:  Curr Opin Chem Biol       Date:  2004-12       Impact factor: 8.822

6.  Stochastic innovation as a mechanism by which catalysts might self-assemble into chemical reaction networks.

Authors:  Justin A Bradford; Ken A Dill
Journal:  Proc Natl Acad Sci U S A       Date:  2007-06-04       Impact factor: 11.205

Review 7.  Synthetic protocell biology: from reproduction to computation.

Authors:  Ricard V Solé; Andreea Munteanu; Carlos Rodriguez-Caso; Javier Macía
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2007-10-29       Impact factor: 6.237

Review 8.  Relics from the RNA world.

Authors:  D C Jeffares; A M Poole; D Penny
Journal:  J Mol Evol       Date:  1998-01       Impact factor: 2.395

9.  Prebiotic ribose synthesis: a critical analysis.

Authors:  R Shapiro
Journal:  Orig Life Evol Biosph       Date:  1988       Impact factor: 1.950

10.  Emergent robustness in competition between autocatalytic chemical networks.

Authors:  Richard A Goldstein
Journal:  Orig Life Evol Biosph       Date:  2006-09-14       Impact factor: 1.950

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  2 in total

1.  Origin of self-replicating biopolymers: autocatalytic feedback can jump-start the RNA world.

Authors:  Meng Wu; Paul G Higgs
Journal:  J Mol Evol       Date:  2009-09-24       Impact factor: 2.395

Review 2.  Twenty Years of "Lipid World": A Fertile Partnership with David Deamer.

Authors:  Doron Lancet; Daniel Segrè; Amit Kahana
Journal:  Life (Basel)       Date:  2019-09-20
  2 in total

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