Literature DB >> 20514130

Stochastic variation: from single cells to superorganisms.

Maria L Kilfoil1, Paul Lasko, Ehab Abouheif.   

Abstract

Observed phenotype often fails to correspond with genotype. Although it is well established that uncontrolled genetic modifier effects and environmental variability can affect phenotype, stochastic variation in gene expression can also contribute to phenotypic differences. Here we examine recent work that has provided insights into how fundamental physical properties of living cells, and the probabilistic nature of the chemical reactions that underlie gene expression, introduce noise. We focus on instances in which a stochastic decision initiates an event in the development of a multicellular organism and how that decision can be subsequently fixed. We present an example indicating that a similar interplay between an initial stochastic decision and subsequent fixation may underlie the regulation of reproduction in social insects. We argue, therefore, that stochasticity affects biological processes from the single-gene scale through to the complex organization of an ant colony, and represents a largely neglected component of phenotypic variation and evolution.

Year:  2009        PMID: 20514130      PMCID: PMC2839810          DOI: 10.2976/1.3223356

Source DB:  PubMed          Journal:  HFSP J        ISSN: 1955-205X


  54 in total

1.  Stochasticity in transcriptional regulation: origins, consequences, and mathematical representations.

Authors:  T B Kepler; T C Elston
Journal:  Biophys J       Date:  2001-12       Impact factor: 4.033

2.  Regulation of noise in the expression of a single gene.

Authors:  Ertugrul M Ozbudak; Mukund Thattai; Iren Kurtser; Alan D Grossman; Alexander van Oudenaarden
Journal:  Nat Genet       Date:  2002-04-22       Impact factor: 38.330

3.  From fluctuations to phenotypes: the physiology of noise.

Authors:  Michael S Samoilov; Gavin Price; Adam P Arkin
Journal:  Sci STKE       Date:  2006-12-19

4.  Measuring variability.

Authors:  Marcelo Magnasco
Journal:  HFSP J       Date:  2007-09-20

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Authors:  J L Spudich; D E Koshland
Journal:  Nature       Date:  1976-08-05       Impact factor: 49.962

6.  Identification of a novel Drosophila opsin reveals specific patterning of the R7 and R8 photoreceptor cells.

Authors:  W H Chou; K J Hall; D B Wilson; C L Wideman; S M Townson; L V Chadwell; S G Britt
Journal:  Neuron       Date:  1996-12       Impact factor: 17.173

7.  Cell autonomy of lin-12 function in a cell fate decision in C. elegans.

Authors:  G Seydoux; I Greenwald
Journal:  Cell       Date:  1989-06-30       Impact factor: 41.582

8.  Alterations in cell lineage following laser ablation of cells in the somatic gonad of Caenorhabditis elegans.

Authors:  J Kimble
Journal:  Dev Biol       Date:  1981-10-30       Impact factor: 3.582

9.  Positive feedback of G1 cyclins ensures coherent cell cycle entry.

Authors:  Jan M Skotheim; Stefano Di Talia; Eric D Siggia; Frederick R Cross
Journal:  Nature       Date:  2008-07-17       Impact factor: 49.962

10.  Post-transcriptional regulation of the E/Daughterless ortholog HLH-2, negative feedback, and birth order bias during the AC/VU decision in C. elegans.

Authors:  Xantha Karp; Iva Greenwald
Journal:  Genes Dev       Date:  2003-12-15       Impact factor: 11.361

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  7 in total

1.  Messy biology and the origins of evolutionary innovations.

Authors:  Dan S Tawfik
Journal:  Nat Chem Biol       Date:  2010-10       Impact factor: 15.040

Review 2.  Stochastic developmental variation, an epigenetic source of phenotypic diversity with far-reaching biological consequences.

Authors:  Günter Vogt
Journal:  J Biosci       Date:  2015-03       Impact factor: 1.826

Review 3.  Challenges in Clinicogenetic Correlations: One Gene - Many Phenotypes.

Authors:  Francesca Magrinelli; Bettina Balint; Kailash P Bhatia
Journal:  Mov Disord Clin Pract       Date:  2021-03-02

4.  An agent-based model of cellular dynamics and circadian variability in human endotoxemia.

Authors:  Tung T Nguyen; Steve E Calvano; Stephen F Lowry; Ioannis P Androulakis
Journal:  PLoS One       Date:  2013-01-30       Impact factor: 3.240

5.  Evidence for a sexual dimorphism in gene expression noise in metazoan species.

Authors:  Carlos Díaz-Castillo
Journal:  PeerJ       Date:  2015-01-29       Impact factor: 2.984

6.  Asymmetrical Damage Partitioning in Bacteria: A Model for the Evolution of Stochasticity, Determinism, and Genetic Assimilation.

Authors:  Lin Chao; Camilla Ulla Rang; Audrey Menegaz Proenca; Jasper Ubirajara Chao
Journal:  PLoS Comput Biol       Date:  2016-01-13       Impact factor: 4.475

7.  Lifetime Distributions from Tracking Individual BC3H1 Cells Subjected to Yessotoxin.

Authors:  Mónica Suárez Korsnes; Reinert Korsnes
Journal:  Front Bioeng Biotechnol       Date:  2015-10-21
  7 in total

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