Literature DB >> 22160690

Antagonistic gene transcripts regulate adaptation to new growth environments.

Bridget L Baumgartner1, Matthew R Bennett, Michael Ferry, Tracy L Johnson, Lev S Tsimring, Jeff Hasty.   

Abstract

Cells have evolved complex regulatory networks that reorganize gene expression patterns in response to changing environmental conditions. These changes often involve redundant mechanisms that affect various levels of gene expression. Here, we examine the consequences of enhanced mRNA degradation in the galactose utilization network of Saccharomyces cerevisiae. We observe that glucose-induced degradation of GAL1 transcripts provides a transient growth advantage to cells upon addition of glucose. We show that the advantage arises from relief of translational competition between GAL1 transcripts and those of cyclin CLN3, a translationally regulated initiator of cell division. This competition creates a translational bottleneck that balances the production of Gal1p and Cln3p and represents a posttranscriptional control mechanism that enhances the cell's ability to adapt to changes in carbon source. We present evidence that the spatial regulation of GAL1 and CLN3 transcripts is what allows growth to be maintained during fluctuations of glucose availability. Our results provide unique insights into how cells optimize energy use during growth in a dynamic environment.

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Year:  2011        PMID: 22160690      PMCID: PMC3248483          DOI: 10.1073/pnas.1111408109

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  22 in total

1.  Cln3 activates G1-specific transcription via phosphorylation of the SBF bound repressor Whi5.

Authors:  Robertus A M de Bruin; W Hayes McDonald; Tatyana I Kalashnikova; John Yates; Curt Wittenberg
Journal:  Cell       Date:  2004-06-25       Impact factor: 41.582

2.  ASH1 mRNA localization in three acts.

Authors:  D L Beach; K Bloom
Journal:  Mol Biol Cell       Date:  2001-09       Impact factor: 4.138

3.  A set of vectors with a tetracycline-regulatable promoter system for modulated gene expression in Saccharomyces cerevisiae.

Authors:  E Garí; L Piedrafita; M Aldea; E Herrero
Journal:  Yeast       Date:  1997-07       Impact factor: 3.239

Review 4.  Microfluidic devices for measuring gene network dynamics in single cells.

Authors:  Matthew R Bennett; Jeff Hasty
Journal:  Nat Rev Genet       Date:  2009-08-11       Impact factor: 53.242

5.  Kinetic evidence for a critical rate of protein synthesis in the Saccharomyces cerevisiae yeast cell cycle.

Authors:  S A Moore
Journal:  J Biol Chem       Date:  1988-07-15       Impact factor: 5.157

6.  The role of the 5' untranslated region (UTR) in glucose-dependent mRNA decay.

Authors:  Bernard J de la Cruz; Susana Prieto; Immo E Scheffler
Journal:  Yeast       Date:  2002-07       Impact factor: 3.239

Review 7.  Transcriptional regulation in the yeast GAL gene family: a complex genetic network.

Authors:  D Lohr; P Venkov; J Zlatanova
Journal:  FASEB J       Date:  1995-06       Impact factor: 5.191

8.  CDK activity antagonizes Whi5, an inhibitor of G1/S transcription in yeast.

Authors:  Michael Costanzo; Joy L Nishikawa; Xiaojing Tang; Jonathan S Millman; Oliver Schub; Kevin Breitkreuz; Danielle Dewar; Ivan Rupes; Brenda Andrews; Mike Tyers
Journal:  Cell       Date:  2004-06-25       Impact factor: 41.582

9.  Control of the yeast cell cycle by protein synthesis.

Authors:  L Popolo; M Vanoni; L Alberghina
Journal:  Exp Cell Res       Date:  1982-11       Impact factor: 3.905

10.  Growth landscape formed by perception and import of glucose in yeast.

Authors:  Hyun Youk; Alexander van Oudenaarden
Journal:  Nature       Date:  2009-12-17       Impact factor: 49.962

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  18 in total

1.  Translational cross talk in gene networks.

Authors:  William H Mather; Jeff Hasty; Lev S Tsimring; Ruth J Williams
Journal:  Biophys J       Date:  2013-06-04       Impact factor: 4.033

2.  Long-term model predictive control of gene expression at the population and single-cell levels.

Authors:  Jannis Uhlendorf; Agnès Miermont; Thierry Delaveau; Gilles Charvin; François Fages; Samuel Bottani; Gregory Batt; Pascal Hersen
Journal:  Proc Natl Acad Sci U S A       Date:  2012-08-14       Impact factor: 11.205

3.  Making gene circuits sing.

Authors:  Arthur Prindle; Jeff Hasty
Journal:  Proc Natl Acad Sci U S A       Date:  2012-10-01       Impact factor: 11.205

4.  A queueing approach to multi-site enzyme kinetics.

Authors:  Philip Hochendoner; Curtis Ogle; William H Mather
Journal:  Interface Focus       Date:  2014-06-06       Impact factor: 3.906

5.  Criticality and Adaptivity in Enzymatic Networks.

Authors:  Paul J Steiner; Ruth J Williams; Jeff Hasty; Lev S Tsimring
Journal:  Biophys J       Date:  2016-09-06       Impact factor: 4.033

Review 6.  Noise in biology.

Authors:  Lev S Tsimring
Journal:  Rep Prog Phys       Date:  2014-01-20

Review 7.  How to train your microbe: methods for dynamically characterizing gene networks.

Authors:  Sebastian M Castillo-Hair; Oleg A Igoshin; Jeffrey J Tabor
Journal:  Curr Opin Microbiol       Date:  2015-02-10       Impact factor: 7.934

Review 8.  The yeast galactose network as a quantitative model for cellular memory.

Authors:  Sarah R Stockwell; Christian R Landry; Scott A Rifkin
Journal:  Mol Biosyst       Date:  2014-10-20

9.  Changes in translational efficiency is a dominant regulatory mechanism in the environmental response of bacteria.

Authors:  Ronald C Taylor; Bobbie-Jo M Webb Robertson; Lye Meng Markillie; Margrethe H Serres; Bryan E Linggi; Joshua T Aldrich; Eric A Hill; Margaret F Romine; Mary S Lipton; H Steven Wiley
Journal:  Integr Biol (Camb)       Date:  2013-09-30       Impact factor: 2.192

10.  Measuring competitive fitness in dynamic environments.

Authors:  Ivan A Razinkov; Bridget L Baumgartner; Matthew R Bennett; Lev S Tsimring; Jeff Hasty
Journal:  J Phys Chem B       Date:  2013-08-07       Impact factor: 2.991

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