Literature DB >> 18629162

Solanaceae--a model for linking genomics with biodiversity.

Sandra Knapp1, Lynn Bohs, Michael Nee, David M Spooner.   

Abstract

Recent progress in understanding the phylogeny of the economically important plant family Solanaceae makes this an ideal time to develop models for linking the new data on plant genomics with the huge diversity of naturally occurring species in the family. Phylogenetics provides the framework with which to investigate these linkages but, critically, good species-level descriptive resources for the Solanaceae community are currently missing. Phylogeny in the family as a whole is briefly reviewed, and the new NSF Planetary Biodiversity Inventories project 'PBI: Solanum-a worldwide treatment' is described. The aims of this project are to provide species-level information across the global scope of the genus Solanum and to make this available over the Internet. The project is in its infancy, but will make available nomenclatural information, descriptions, keys and illustrative material for all of the approximately 1500 species of Solanum. With this project, the opportunity of linking valid, up-to-date taxonomic information about wild species of Solanum with the genomic information being generated about the economically important species of the genus (potato, tomato and eggplant) can be realized. The phylogenetic framework in which the PBI project is set is also of enormous potential benefit to other workers on Solanum. The community of biologists working with Solanaceae has a unique opportunity to effectively link genomics and taxonomy for better understanding of this important family, taking plant biology to a new level for the next century.

Entities:  

Year:  2004        PMID: 18629162      PMCID: PMC2447452          DOI: 10.1002/cfg.393

Source DB:  PubMed          Journal:  Comp Funct Genomics        ISSN: 1531-6912


  8 in total

1.  The importance of being earnest: what, if anything, constitutes a "specimen examined?".

Authors:  L A Ruedas; J Salazar-Bravo; J W Dragoo; T L Yates
Journal:  Mol Phylogenet Evol       Date:  2000-10       Impact factor: 4.286

Review 2.  Plant systematics in the age of genomics.

Authors:  D C Daly; K M Cameron; D W Stevenson
Journal:  Plant Physiol       Date:  2001-12       Impact factor: 8.340

3.  Toward the analysis of the petunia MADS box gene family by reverse and forward transposon insertion mutagenesis approaches: B, C, and D floral organ identity functions require SEPALLATA-like MADS box genes in petunia.

Authors:  Michiel Vandenbussche; Jan Zethof; Erik Souer; Ronald Koes; Giovanni B Tornielli; Mario Pezzotti; Silvia Ferrario; Gerco C Angenent; Tom Gerats
Journal:  Plant Cell       Date:  2003-10-23       Impact factor: 11.277

Review 4.  The role of phylogenetics in comparative genetics.

Authors:  Douglas E Soltis; Pamela S Soltis
Journal:  Plant Physiol       Date:  2003-08       Impact factor: 8.340

5.  Tobacco to tomatoes: a phylogenetic perspective on fruit diversity in the Solanaceae.

Authors:  Sandra Knapp
Journal:  J Exp Bot       Date:  2002-10       Impact factor: 6.992

6.  Petunia Ap2-like genes and their role in flower and seed development.

Authors:  T Maes; N Van de Steene; J Zethof; M Karimi; M D'Hauw; G Mares; M Van Montagu; T Gerats
Journal:  Plant Cell       Date:  2001-02       Impact factor: 11.277

7.  Gramene: development and integration of trait and gene ontologies for rice.

Authors:  Pankaj Jaiswal; Doreen Ware; Junjian Ni; Kuan Chang; Wei Zhao; Steven Schmidt; Xiaokang Pan; Kenneth Clark; Leonid Teytelman; Samuel Cartinhour; Lincoln Stein; Susan McCouch
Journal:  Comp Funct Genomics       Date:  2002

8.  The Plant Ontology Consortium and plant ontologies.

Authors: 
Journal:  Comp Funct Genomics       Date:  2002
  8 in total
  54 in total

Review 1.  Recent advances in tomato functional genomics: utilization of VIGS.

Authors:  Pranav Pankaj Sahu; Swati Puranik; Moinuddin Khan; Manoj Prasad
Journal:  Protoplasma       Date:  2012-06-06       Impact factor: 3.356

2.  SNP marker integration and QTL analysis of 12 agronomic and morphological traits in F₈ RILs of pepper (Capsicum annuum L.).

Authors:  Fu-Hao Lu; Soon-Wook Kwon; Min-Young Yoon; Ki-Taek Kim; Myeong-Cheoul Cho; Moo-Kyung Yoon; Yong-Jin Park
Journal:  Mol Cells       Date:  2012-06-08       Impact factor: 5.034

3.  Evolution of chromosome 6 of Solanum species revealed by comparative fluorescence in situ hybridization mapping.

Authors:  Qunfeng Lou; Marina Iovene; David M Spooner; C Robin Buell; Jiming Jiang
Journal:  Chromosoma       Date:  2010-03-30       Impact factor: 4.316

4.  Enzyme activity profiles during fruit development in tomato cultivars and Solanum pennellii.

Authors:  Marie-Caroline Steinhauser; Dirk Steinhauser; Karin Koehl; Fernando Carrari; Yves Gibon; Alisdair R Fernie; Mark Stitt
Journal:  Plant Physiol       Date:  2010-03-24       Impact factor: 8.340

5.  Rate of meristem maturation determines inflorescence architecture in tomato.

Authors:  Soon Ju Park; Ke Jiang; Michael C Schatz; Zachary B Lippman
Journal:  Proc Natl Acad Sci U S A       Date:  2011-12-27       Impact factor: 11.205

6.  A single domestication for potato based on multilocus amplified fragment length polymorphism genotyping.

Authors:  David M Spooner; Karen McLean; Gavin Ramsay; Robbie Waugh; Glenn J Bryan
Journal:  Proc Natl Acad Sci U S A       Date:  2005-10-03       Impact factor: 11.205

Review 7.  QTL analysis of leaf architecture.

Authors:  José Manuel Pérez-Pérez; David Esteve-Bruna; José Luis Micol
Journal:  J Plant Res       Date:  2009-11-03       Impact factor: 2.629

8.  Synchronization of the flowering transition by the tomato TERMINATING FLOWER gene.

Authors:  Cora A MacAlister; Soon Ju Park; Ke Jiang; Fabien Marcel; Abdelhafid Bendahmane; Yinon Izkovich; Yuval Eshed; Zachary B Lippman
Journal:  Nat Genet       Date:  2012-11-11       Impact factor: 38.330

9.  Genome-wide identification and functional analysis of the WDR protein family in potato.

Authors:  Nianjiao Tao; Wenjiao Zhu; Minjie Gan; Min Chen; Ting Li; Alexander Tendu; Dongli Jiao; Man Wang; Chunmei Xue; Yuanmi Lin; Qing Yang
Journal:  3 Biotech       Date:  2019-11-01       Impact factor: 2.406

10.  Physiological characterization, transcriptomic profiling, and microsatellite marker mining of Lycium ruthenicum.

Authors:  Jin-Huan Chen; Dong-Zhi Zhang; Chong Zhang; Mei-Long Xu; Wei-Lun Yin
Journal:  J Zhejiang Univ Sci B       Date:  2017 Nov.       Impact factor: 3.066

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