Warning: Undefined array key "mm" in /www/wwwroot/www.ai-bt.com/si.php on line 10 Deprecated: trim(): Passing null to parameter #1 ($string) of type string is deprecated in /www/wwwroot/www.ai-bt.com/si.php on line 10 The Plant Ontology Consortium and plant ontologies.

Literature DB >> 18628842

The Plant Ontology Consortium and plant ontologies.

Abstract

The goal of the Plant Ontology Consortium is to produce structured controlled vocabularies, arranged in ontologies, that can be applied to plant-based database information even as knowledge of the biology of the relevant plant taxa (e.g. development, anatomy, morphology, genomics, proteomics) is accumulating and changing. The collaborators of the Plant Ontology Consortium (POC) represent a number of core participant database groups. The Plant Ontology Consortium is expanding the paradigm of the Gene Ontology Consortium (http://www.geneontology.org). Various trait ontologies (agronomic traits, mutant phenotypes, phenotypes, traits, and QTL) and plant ontologies (plant development, anatomy [incl. morphology]) for several taxa (Arabidopsis, maize/corn/Zea mays and rice/Oryza) are under development. The products of the Plant Ontology Consortium will be open-source.

Entities: Species

Year: 2002 PMID： 18628842 PMCID： PMC2447263 DOI： 10.1002/cfg.154

Source DB: PubMed Journal: Comp Funct Genomics ISSN： 1531-6912

1 in total

1. Creating the gene ontology resource: design and implementation.

Authors:
Journal: Genome Res Date: 2001-08 Impact factor: 9.043

1 in total

27 in total

1. GMO Genetic Elements Thesaurus (GMO-GET): a controlled vocabulary for the consensus designation of introduced or modified genetic elements in genetically modified organisms.

Authors: Paulien Adamse; Emilie Dagand; Karen Bohmert-Tatarev; Daniela Wahler; Manoela Miranda; Esther J Kok; Joachim Bendiek
Journal: BMC Bioinformatics Date: 2021-02-05 Impact factor: 3.169

2. GERMINATE. a generic database for integrating genotypic and phenotypic information for plant genetic resource collections.

Authors: Jennifer M Lee; Guy F Davenport; David Marshall; T H Noel Ellis; Michael J Ambrose; Jo Dicks; Theo J L van Hintum; Andrew J Flavell
Journal: Plant Physiol Date: 2005-10 Impact factor: 8.340

3. Root system markup language: toward a unified root architecture description language.

Authors: Guillaume Lobet; Michael P Pound; Julien Diener; Christophe Pradal; Xavier Draye; Christophe Godin; Mathieu Javaux; Daniel Leitner; Félicien Meunier; Philippe Nacry; Tony P Pridmore; Andrea Schnepf
Journal: Plant Physiol Date: 2015-01-22 Impact factor: 8.340

4. Development of a controlled vocabulary and software application to analyze fruit shape variation in tomato and other plant species.

Authors: Marin Talbot Brewer; Lixin Lang; Kikuo Fujimura; Nancy Dujmovic; Simon Gray; Esther van der Knaap
Journal: Plant Physiol Date: 2006-05 Impact factor: 8.340

5. CORNET: a user-friendly tool for data mining and integration.

Authors: Stefanie De Bodt; Diana Carvajal; Jens Hollunder; Joost Van den Cruyce; Sara Movahedi; Dirk Inzé
Journal: Plant Physiol Date: 2010-01-06 Impact factor: 8.340

6. Enriched partial correlations in genome-wide gene expression profiles of hybrids (A. thaliana): a systems biological approach towards the molecular basis of heterosis.

Authors: Sandra Andorf; Joachim Selbig; Thomas Altmann; Kathrin Poos; Hanna Witucka-Wall; Dirk Repsilber
Journal: Theor Appl Genet Date: 2009-11-17 Impact factor: 5.699

The Plant Ontology Consortium and plant ontologies.

1. Creating the gene ontology resource: design and implementation.

1. GMO Genetic Elements Thesaurus (GMO-GET): a controlled vocabulary for the consensus designation of introduced or modified genetic elements in genetically modified organisms.

2. GERMINATE. a generic database for integrating genotypic and phenotypic information for plant genetic resource collections.

3. Root system markup language: toward a unified root architecture description language.

4. Development of a controlled vocabulary and software application to analyze fruit shape variation in tomato and other plant species.

5. CORNET: a user-friendly tool for data mining and integration.

6. Enriched partial correlations in genome-wide gene expression profiles of hybrids (A. thaliana): a systems biological approach towards the molecular basis of heterosis.

7. Integration of a systems biological network analysis and QTL results for biomass heterosis in Arabidopsis thaliana.

8. Computable visually observed phenotype ontological framework for plants.

9. RoBuST: an integrated genomics resource for the root and bulb crop families Apiaceae and Alliaceae.

10. PMRD: a curated database for genes and mutants involved in plant male reproduction.