Literature DB >> 22669349

Recent advances in tomato functional genomics: utilization of VIGS.

Pranav Pankaj Sahu1, Swati Puranik, Moinuddin Khan, Manoj Prasad.   

Abstract

Tomato unquestionably occupies a significant position in world vegetable production owing to its world-wide consumption. The tomato genome sequencing efforts being recently concluded, it becomes more imperative to recognize important functional genes from this treasure of generated information for improving tomato yield. While much progress has been made in conventional tomato breeding, post-transcriptional gene silencing (PTGS) offers an alternative approach for advancement of tomato functional genomics. In particular, virus-induced gene silencing (VIGS) is increasingly being used as rapid, reliable, and lucrative screening strategy to elucidate gene function. In this review, we focus on the recent advancement made through exploiting the potential of this technique for manipulating different agronomically important traits in tomato by discussing several case studies.

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Year:  2012        PMID: 22669349     DOI: 10.1007/s00709-012-0421-7

Source DB:  PubMed          Journal:  Protoplasma        ISSN: 0033-183X            Impact factor:   3.356


  67 in total

1.  A novel link between tomato GRAS genes, plant disease resistance and mechanical stress response.

Authors:  Maya Mayrose; Sophia K Ekengren; Shiri Melech-Bonfil; Gregory B Martin; Guido Sessa
Journal:  Mol Plant Pathol       Date:  2006-11       Impact factor: 5.663

2.  The stem rust resistance gene Rpg5 encodes a protein with nucleotide-binding-site, leucine-rich, and protein kinase domains.

Authors:  R Brueggeman; A Druka; J Nirmala; T Cavileer; T Drader; N Rostoks; A Mirlohi; H Bennypaul; U Gill; D Kudrna; C Whitelaw; A Kilian; F Han; Y Sun; K Gill; B Steffenson; A Kleinhofs
Journal:  Proc Natl Acad Sci U S A       Date:  2008-09-23       Impact factor: 11.205

3.  NTRC and chloroplast-generated reactive oxygen species regulate Pseudomonas syringae pv. tomato disease development in tomato and Arabidopsis.

Authors:  Yasuhiro Ishiga; Takako Ishiga; Tamding Wangdi; Kirankumar S Mysore; Srinivasa Rao Uppalapati
Journal:  Mol Plant Microbe Interact       Date:  2012-03       Impact factor: 4.171

4.  RIN transcription factor plays an important role in ethylene biosynthesis of tomato fruit ripening.

Authors:  Ling Li; Benzhong Zhu; Daqi Fu; Yunbo Luo
Journal:  J Sci Food Agric       Date:  2011-08-30       Impact factor: 3.638

5.  Loss of function of FATTY ACID DESATURASE7 in tomato enhances basal aphid resistance in a salicylate-dependent manner.

Authors:  Carlos A Avila; Lirio M Arévalo-Soliz; Lingling Jia; Duroy A Navarre; Zhaorigetu Chen; Gregg A Howe; Qing-Wei Meng; Jonathon E Smith; Fiona L Goggin
Journal:  Plant Physiol       Date:  2012-01-30       Impact factor: 8.340

6.  Silencing of SlFTR-c, the catalytic subunit of ferredoxin:thioredoxin reductase, induces pathogenesis-related genes and pathogen resistance in tomato plants.

Authors:  Chan Ju Lim; Woong Bom Kim; Bok-Sim Lee; Ha Youn Lee; Tae-Ho Kwon; Jeong Mee Park; Suk-Yoon Kwon
Journal:  Biochem Biophys Res Commun       Date:  2010-08-10       Impact factor: 3.575

7.  WRKY72-type transcription factors contribute to basal immunity in tomato and Arabidopsis as well as gene-for-gene resistance mediated by the tomato R gene Mi-1.

Authors:  Kishor K Bhattarai; Hagop S Atamian; Isgouhi Kaloshian; Thomas Eulgem
Journal:  Plant J       Date:  2010-04-19       Impact factor: 6.417

8.  An attack of the plant parasite Cuscuta reflexa induces the expression of attAGP, an attachment protein of the host tomato.

Authors:  Markus Albert; Xana Belastegui-Macadam; Ralf Kaldenhoff
Journal:  Plant J       Date:  2006-11       Impact factor: 6.417

9.  Silencing polygalacturonase expression inhibits tomato petiole abscission.

Authors:  Cai-Zhong Jiang; Feng Lu; Wachiraya Imsabai; Shimon Meir; Michael S Reid
Journal:  J Exp Bot       Date:  2008-03-02       Impact factor: 6.992

10.  Solanaceae--a model for linking genomics with biodiversity.

Authors:  Sandra Knapp; Lynn Bohs; Michael Nee; David M Spooner
Journal:  Comp Funct Genomics       Date:  2004
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  11 in total

Review 1.  Involvement of host regulatory pathways during geminivirus infection: a novel platform for generating durable resistance.

Authors:  Pranav Pankaj Sahu; Namisha Sharma; Swati Puranik; Mehanathan Muthamilarasan; Manoj Prasad
Journal:  Funct Integr Genomics       Date:  2014-03       Impact factor: 3.410

Review 2.  Recent advances in plant-virus interaction with emphasis on small interfering RNAs (siRNAs).

Authors:  Namisha Sharma; Pranav Pankaj Sahu; Swati Puranik; Manoj Prasad
Journal:  Mol Biotechnol       Date:  2013-09       Impact factor: 2.695

Review 3.  Plant innate immunity: an updated insight into defense mechanism.

Authors:  Mehanathan Muthamilarasan; Manoj Prasad
Journal:  J Biosci       Date:  2013-06       Impact factor: 1.826

4.  Optimization of Tobacco Rattle Virus (TRV)-Based Virus-Induced Gene Silencing (VIGS) in Tomato.

Authors:  Ashish Kumar Singh; Dibyendu Ghosh; Supriya Chakraborty
Journal:  Methods Mol Biol       Date:  2022

5.  Assessing the genetic variation of Ty-1 and Ty-3 alleles conferring resistance to tomato yellow leaf curl virus in a broad tomato germplasm.

Authors:  Myluska Caro; Maarten G Verlaan; Olga Julián; Richard Finkers; Anne-Marie A Wolters; Samuel F Hutton; John W Scott; Richard Kormelink; Richard G F Visser; Maria J Díez; Ana Pérez-de-Castro; Yuling Bai
Journal:  Mol Breed       Date:  2015-05-26       Impact factor: 2.589

Review 6.  Plant Microbe Interactions in Post Genomic Era: Perspectives and Applications.

Authors:  Jahangir Imam; Puneet K Singh; Pratyoosh Shukla
Journal:  Front Microbiol       Date:  2016-09-26       Impact factor: 5.640

7.  Transcriptomic analysis of cultivated cotton Gossypium hirsutum provides insights into host responses upon whitefly-mediated transmission of cotton leaf curl disease.

Authors:  Rubab Zahra Naqvi; Syed Shan-E-Ali Zaidi; M Shahid Mukhtar; Imran Amin; Bharat Mishra; Susan Strickler; Lukas A Mueller; Muhammad Asif; Shahid Mansoor
Journal:  PLoS One       Date:  2019-02-07       Impact factor: 3.240

Review 8.  Milestones achieved in response to drought stress through reverse genetic approaches.

Authors:  Baljeet Singh; Sarvjeet Kukreja; Umesh Goutam
Journal:  F1000Res       Date:  2018-08-17

9.  Comparative transcriptome profiling of a resistant vs. susceptible tomato (Solanum lycopersicum) cultivar in response to infection by tomato yellow leaf curl virus.

Authors:  Tianzi Chen; Yuanda Lv; Tongming Zhao; Nan Li; Yuwen Yang; Wengui Yu; Xin He; Tingli Liu; Baolong Zhang
Journal:  PLoS One       Date:  2013-11-18       Impact factor: 3.240

10.  Tomato 26S Proteasome subunit RPT4a regulates ToLCNDV transcription and activates hypersensitive response in tomato.

Authors:  Pranav Pankaj Sahu; Namisha Sharma; Swati Puranik; Supriya Chakraborty; Manoj Prasad
Journal:  Sci Rep       Date:  2016-06-01       Impact factor: 4.379

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