Literature DB >> 18627454

A population genomic approach to map recent positive selection in model species.

P Pavlidis1, S Hutter, W Stephan.   

Abstract

Based on nearly complete genome sequences from a variety of organisms data on naturally occurring genetic variation on the scale of hundreds of loci to entire genomes have been collected in recent years. In parallel, new statistical tests have been developed to infer evidence of recent positive selection from these data and to localize the target regions of selection in the genome. These methods have now been successfully applied to Drosophila melanogaster, humans, mice and a few plant species. In genomic regions of normal recombination rates, the targets of positive selection have been mapped down to the level of individual genes.

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Year:  2008        PMID: 18627454     DOI: 10.1111/j.1365-294X.2008.03852.x

Source DB:  PubMed          Journal:  Mol Ecol        ISSN: 0962-1083            Impact factor:   6.185


  25 in total

1.  Searching for footprints of positive selection in whole-genome SNP data from nonequilibrium populations.

Authors:  Pavlos Pavlidis; Jeffrey D Jensen; Wolfgang Stephan
Journal:  Genetics       Date:  2010-04-20       Impact factor: 4.562

Review 2.  Genetic hitchhiking versus background selection: the controversy and its implications.

Authors:  Wolfgang Stephan
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2010-04-27       Impact factor: 6.237

3.  A recent adaptive transposable element insertion near highly conserved developmental loci in Drosophila melanogaster.

Authors:  Josefa González; J Michael Macpherson; Dmitri A Petrov
Journal:  Mol Biol Evol       Date:  2009-05-20       Impact factor: 16.240

Review 4.  Selective Sweeps.

Authors:  Wolfgang Stephan
Journal:  Genetics       Date:  2019-01       Impact factor: 4.562

Review 5.  Phenotypic plasticity in evolutionary rescue experiments.

Authors:  Luis-Miguel Chevin; Romain Gallet; Richard Gomulkiewicz; Robert D Holt; Simon Fellous
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2013-01-19       Impact factor: 6.237

6.  Demographic inference reveals African and European admixture in the North American Drosophila melanogaster population.

Authors:  Pablo Duchen; Daniel Zivkovic; Stephan Hutter; Wolfgang Stephan; Stefan Laurent
Journal:  Genetics       Date:  2012-11-12       Impact factor: 4.562

Review 7.  Microbial genome-enabled insights into plant-microorganism interactions.

Authors:  David S Guttman; Alice C McHardy; Paul Schulze-Lefert
Journal:  Nat Rev Genet       Date:  2014-09-30       Impact factor: 53.242

8.  Detecting Recent Positive Selection with a Single Locus Test Bipartitioning the Coalescent Tree.

Authors:  Zongfeng Yang; Junrui Li; Thomas Wiehe; Haipeng Li
Journal:  Genetics       Date:  2017-12-07       Impact factor: 4.562

9.  Selective Sweep at a QTL in a Randomly Fluctuating Environment.

Authors:  Luis-Miguel Chevin
Journal:  Genetics       Date:  2019-09-16       Impact factor: 4.562

10.  Population genomics of parallel adaptation in threespine stickleback using sequenced RAD tags.

Authors:  Paul A Hohenlohe; Susan Bassham; Paul D Etter; Nicholas Stiffler; Eric A Johnson; William A Cresko
Journal:  PLoS Genet       Date:  2010-02-26       Impact factor: 5.917

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