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Literature DB >> 18618019

statnet: Software Tools for the Representation, Visualization, Analysis and Simulation of Network Data.

Mark S Handcock¹, David R Hunter, Carter T Butts, Steven M Goodreau, Martina Morris.
1. University of Washington.

Abstract

statnet is a suite of software packages for statistical network analysis. The packages implement recent advances in network modeling based on exponential-family random graph models (ERGM). The components of the package provide a comprehensive framework for ERGM-based network modeling, including tools for model estimation, model evaluation, model-based network simulation, and network visualization. This broad functionality is powered by a central Markov chain Monte Carlo (MCMC) algorithm. The coding is optimized for speed and robustness.

Year: 2008 PMID： 18618019 PMCID： PMC2447931 DOI： 10.18637/jss.v024.i01

Source DB: PubMed Journal: J Stat Softw ISSN： 1548-7660 Impact factor: 6.440

10 in total

1. Social networks: Sexual contacts and epidemic thresholds.

Authors: James Holland Jones; Mark S Handcock
Journal: Nature Date: 2003-06-05 Impact factor: 49.962

2. An assessment of preferential attachment as a mechanism for human sexual network formation.

Authors: James Holland Jones; Mark S Handcock
Journal: Proc Biol Sci Date: 2003-06-07 Impact factor: 5.349

3. Likelihood-based inference for stochastic models of sexual network formation.

Authors: Mark S Handcock; James Holland Jones
Journal: Theor Popul Biol Date: 2004-06 Impact factor: 1.570

4. Interval estimates for epidemic thresholds in two-sex network models.

Authors: Mark S Handcock; James Holland Jones
Journal: Theor Popul Biol Date: 2006-04-06 Impact factor: 1.570

5. Birds of a feather, or friend of a friend? Using exponential random graph models to investigate adolescent social networks.

Authors: Steven M Goodreau; James A Kitts; Martina Morris
Journal: Demography Date: 2009-02

6. A statnet Tutorial.

Authors: Steven M Goodreau; Mark S Handcock; David R Hunter; Carter T Butts; Martina Morris
Journal: J Stat Softw Date: 2008-05 Impact factor: 6.440

7. Specification of Exponential-Family Random Graph Models: Terms and Computational Aspects.

Authors: Martina Morris; Mark S Handcock; David R Hunter
Journal: J Stat Softw Date: 2008 Impact factor: 6.440

8. Advances in Exponential Random Graph (p*) Models Applied to a Large Social Network.

Authors: Steven M Goodreau
Journal: Soc Networks Date: 2007-05

9. ergm: A Package to Fit, Simulate and Diagnose Exponential-Family Models for Networks.

Authors: David R Hunter; Mark S Handcock; Carter T Butts; Steven M Goodreau; Martina Morris
Journal: J Stat Softw Date: 2008-05-01 Impact factor: 6.440

10. networksis: A Package to Simulate Bipartite Graphs with Fixed Marginals Through Sequential Importance Sampling.

Authors: Ryan Admiraal; Mark S Handcock
Journal: J Stat Softw Date: 2008-05-08 Impact factor: 6.440

10 in total

121 in total

1. Topological analysis and interactive visualization of biological networks and protein structures.

Authors: Nadezhda T Doncheva; Yassen Assenov; Francisco S Domingues; Mario Albrecht
Journal: Nat Protoc Date: 2012-03-15 Impact factor: 13.491

2. NetCoMi: network construction and comparison for microbiome data in R.

Authors: Stefanie Peschel; Christian L Müller; Erika von Mutius; Anne-Laure Boulesteix; Martin Depner
Journal: Brief Bioinform Date: 2021-07-20 Impact factor: 11.622

3. An exponential random graph modeling approach to creating group-based representative whole-brain connectivity networks.

Authors: Sean L Simpson; Malaak N Moussa; Paul J Laurienti
Journal: Neuroimage Date: 2012-01-17 Impact factor: 6.556

4. EpiModel: An R Package for Mathematical Modeling of Infectious Disease over Networks.

Authors: Samuel M Jenness; Steven M Goodreau; Martina Morris
Journal: J Stat Softw Date: 2018-04-20 Impact factor: 6.440

5. A statnet Tutorial.

Authors: Steven M Goodreau; Mark S Handcock; David R Hunter; Carter T Butts; Martina Morris
Journal: J Stat Softw Date: 2008-05 Impact factor: 6.440

6. Specification of Exponential-Family Random Graph Models: Terms and Computational Aspects.

Authors: Martina Morris; Mark S Handcock; David R Hunter
Journal: J Stat Softw Date: 2008 Impact factor: 6.440

7. "This is the medicine:" A Kenyan community responds to a sexual concurrency reduction intervention.

Authors: Amelia Knopf; Kawango Agot; John Sidle; Violet Naanyu; Martina Morris
Journal: Soc Sci Med Date: 2014-02-04 Impact factor: 4.634

8. Novel proteases from the genome of the carnivorous plant Drosera capensis: Structural prediction and comparative analysis.

Authors: Carter T Butts; Jan C Bierma; Rachel W Martin
Journal: Proteins Date: 2016-07-13

Review 9. Mechanisms of tumor resistance to EGFR-targeted therapies.

Authors: Elizabeth A Hopper-Borge; Rochelle E Nasto; Vladimir Ratushny; Louis M Weiner; Erica A Golemis; Igor Astsaturov
Journal: Expert Opin Ther Targets Date: 2009-03 Impact factor: 6.902

10. The Interaction of Risk Network Structures and Virus Natural History in the Non-spreading of HIV Among People Who Inject Drugs in the Early Stages of the Epidemic.

Authors: Kirk Dombrowski; Bilal Khan; Patrick Habecker; Holly Hagan; Samuel R Friedman; Mohamed Saad
Journal: AIDS Behav Date: 2017-04