Literature DB >> 29129971

networksis: A Package to Simulate Bipartite Graphs with Fixed Marginals Through Sequential Importance Sampling.

Ryan Admiraal1, Mark S Handcock2.   

Abstract

The ability to simulate graphs with given properties is important for the analysis of social networks. Sequential importance sampling has been shown to be particularly effective in estimating the number of graphs adhering to fixed marginals and in estimating the null distribution of graph statistics. This paper describes the networksis package for R and how its simulate and simulate_sis functions can be used to address both of these tasks as well as generate initial graphs for Markov chain Monte Carlo simulations.

Keywords:  Markov chain Monte Carlo; R; bipartite network; graph counting; networks; social network analysis; statnet

Year:  2008        PMID: 29129971      PMCID: PMC5679483          DOI: 10.18637/jss.v024.i08

Source DB:  PubMed          Journal:  J Stat Softw        ISSN: 1548-7660            Impact factor:   6.440


  3 in total

1.  ergm: A Package to Fit, Simulate and Diagnose Exponential-Family Models for Networks.

Authors:  David R Hunter; Mark S Handcock; Carter T Butts; Steven M Goodreau; Martina Morris
Journal:  J Stat Softw       Date:  2008-05-01       Impact factor: 6.440

2.  Island-sharing by archipelago species.

Authors:  Alan Roberts; Lewis Stone
Journal:  Oecologia       Date:  1990-07       Impact factor: 3.225

3.  Null matrices and the analysis of species co-occurrences.

Authors:  James G Sanderson; Michael P Moulton; Ralph G Selfridge
Journal:  Oecologia       Date:  1998-08       Impact factor: 3.225

  3 in total
  5 in total

1.  statnet: Software Tools for the Representation, Visualization, Analysis and Simulation of Network Data.

Authors:  Mark S Handcock; David R Hunter; Carter T Butts; Steven M Goodreau; Martina Morris
Journal:  J Stat Softw       Date:  2008       Impact factor: 6.440

2.  A method for making inferences in network analysis: Comment on Forbes, Wright, Markon, and Krueger (2017).

Authors:  Douglas Steinley; Michaela Hoffman; Michael J Brusco; Kenneth J Sher
Journal:  J Abnorm Psychol       Date:  2017-10

3.  Size matters: concurrency and the epidemic potential of HIV in small networks.

Authors:  Nicole Bohme Carnegie; Martina Morris
Journal:  PLoS One       Date:  2012-08-24       Impact factor: 3.240

4.  Regime shifts in the anthropocene: drivers, risks, and resilience.

Authors:  Juan Carlos Rocha; Garry D Peterson; Reinette Biggs
Journal:  PLoS One       Date:  2015-08-12       Impact factor: 3.240

5.  NuChart: an R package to study gene spatial neighbourhoods with multi-omics annotations.

Authors:  Ivan Merelli; Pietro Liò; Luciano Milanesi
Journal:  PLoS One       Date:  2013-09-19       Impact factor: 3.240

  5 in total

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