Literature DB >> 18614660

Diminished human immunodeficiency virus type 1 DNA yield from dried blood spots after storage in a humid incubator at 37 degrees C compared to -20 degrees C.

Caroline Mitchell1, Cheryl Jennings, Donald Brambilla, Grace Aldrovandi, Angela Martin Amedee, Ingrid Beck, James W Bremer, Robert Coombs, Don Decker, Susan Fiscus, Joseph Fitzgibbon, Katherine Luzuriaga, John Moye, Paul Palumbo, Patricia Reichelderfer, Mohan Somasundaran, Wendy Stevens, Lisa Frenkel.   

Abstract

Collecting whole blood on filter paper simplifies the processing, transport, and storage of specimens used for the diagnosis of human immunodeficiency virus type 1 (HIV-1) and other tests. Specimens may be collected in tropical or rural areas with minimal facilities for handling specimens. To compare simulated tropical conditions with freezer storage, we examined the stability of HIV-1 DNA in dried blood spots (DBS) stored in humid heat and at -20 degrees C. DBS were created by spotting 50-microl aliquots of whole blood on 903 filter paper. DNA was extracted from DBS at baseline and after 2, 6, or 12 months of storage at -20 degrees C or at 37 degrees C with approximately 85% humidity. The DNA was tested undiluted or diluted using the Amplicor HIV-1 DNA PCR (Roche), version 1.5. Each reaction was scored positive, negative, or indeterminate based on optical density. Results were compared between storage conditions and over time. A total of 1,832 reactions from 916 DBS were analyzed, including 100 DBS at baseline, 418 stored at -20 degrees C, and 398 stored at 37 degrees C. A chi-square test showed fewer positive reactions for DBS stored at 37 degrees C (55%) than for those stored at -20 degrees C (78%) (P < 0.0001). Samples stored at -20 degrees C showed little change in the probability of detection of HIV-1 DNA over time; the odds ratio (OR) was 0.93 after storage for 1 year. Samples stored at 37 degrees C demonstrated a significant change in detection at 1 year (OR, 0.29). We conclude that exposure of DBS to 37 degrees C and high humidity impaired the recovery of HIV-1 DNA from DBS, whereas DNA recovery was preserved when DBS were stored frozen.

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Year:  2008        PMID: 18614660      PMCID: PMC2546762          DOI: 10.1128/JCM.00359-08

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN: 0095-1137            Impact factor:   5.948


  14 in total

1.  Rapid and simple method for purification of nucleic acids.

Authors:  R Boom; C J Sol; M M Salimans; C L Jansen; P M Wertheim-van Dillen; J van der Noordaa
Journal:  J Clin Microbiol       Date:  1990-03       Impact factor: 5.948

2.  Evaluation of dried whole blood spots obtained by heel or finger stick as an alternative to venous blood for diagnosis of human immunodeficiency virus type 1 infection in vertically exposed infants in the routine diagnostic laboratory.

Authors:  Janet C Patton; Eveline Akkers; Ashraf H Coovadia; Tammy M Meyers; Wendy S Stevens; Gayle G Sherman
Journal:  Clin Vaccine Immunol       Date:  2006-12-13

3.  Chelex 100 as a medium for simple extraction of DNA for PCR-based typing from forensic material.

Authors:  P S Walsh; D A Metzger; R Higuchi
Journal:  Biotechniques       Date:  1991-04       Impact factor: 1.993

4.  Stability of human immunodeficiency virus type 1 antibodies in whole blood dried on filter paper and stored under various tropical conditions in Kinshasa, Zaire.

Authors:  F Behets; M Kashamuka; M Pappaioanou; T A Green; R W Ryder; V Batter; J R George; W H Hannon; T C Quinn
Journal:  J Clin Microbiol       Date:  1992-05       Impact factor: 5.948

5.  Simple, sensitive, and specific detection of human immunodeficiency virus type 1 subtype B DNA in dried blood samples for diagnosis in infants in the field.

Authors:  I A Beck; K D Drennan; A J Melvin; K M Mohan; A M Herz; J Alarcón; J Piscoya; C Velázquez; L M Frenkel
Journal:  J Clin Microbiol       Date:  2001-01       Impact factor: 5.948

6.  Mortality of infected and uninfected infants born to HIV-infected mothers in Africa: a pooled analysis.

Authors:  Marie-Louise Newell; Hoosen Coovadia; Marjo Cortina-Borja; Nigel Rollins; Philippe Gaillard; Francois Dabis
Journal:  Lancet       Date:  2004 Oct 2-8       Impact factor: 79.321

7.  Stability of dried blood spot specimens for detection of human immunodeficiency virus DNA by polymerase chain reaction.

Authors:  S Cassol; T Salas; M J Gill; M Montpetit; J Rudnik; C T Sy; M V O'Shaughnessy
Journal:  J Clin Microbiol       Date:  1992-12       Impact factor: 5.948

8.  HIV seroreversion time in HIV-1-uninfected children born to HIV-1-infected mothers in Malawi.

Authors:  Jyoti Gulia; Newton Kumwenda; Qing Li; Taha E Taha
Journal:  J Acquir Immune Defic Syndr       Date:  2007-11-01       Impact factor: 3.731

9.  Limitations in the laboratory diagnosis of vertically acquired HIV infection.

Authors:  T A Rakusan; R H Parrott; J L Sever
Journal:  J Acquir Immune Defic Syndr (1988)       Date:  1991

10.  Persistence of human immunodeficiency virus type 1 subtype B DNA in dried-blood samples on FTA filter paper.

Authors:  Chung-Chen Li; Ingrid A Beck; Kristy D Seidel; Lisa M Frenkel
Journal:  J Clin Microbiol       Date:  2004-08       Impact factor: 5.948

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  11 in total

1.  The stability of HIV-1 nucleic acid in whole blood and improved detection of HIV-1 in alternative specimen types when compared to Dried Blood Spot (DBS) specimens.

Authors:  Cheryl Jennings; Brian Harty; Salvatore R Scianna; Suzanne Granger; Amy Couzens; Daniel Zaccaro; James W Bremer
Journal:  J Virol Methods       Date:  2018-08-17       Impact factor: 2.014

2.  Consistent viral DNA quantification after prolonged storage at ambient temperature.

Authors:  Benjamin Zaniello; Meei-Li Huang; Anqi Cheng; Stacy Selke; Anna Wald; Keith R Jerome; Amalia S Magaret
Journal:  J Virol Methods       Date:  2015-11-22       Impact factor: 2.014

3.  Detection of low levels of human immunodeficiency virus (HIV) may be critical for early diagnosis of pediatric HIV infection by use of dried blood spots.

Authors:  Jan Walter; Louise Kuhn; Katherine Semrau; Don W Decker; Moses Sinkala; Chipepo Kankasa; Donald M Thea; Marc Bulterys; Chin-Yih Ou; Grace M Aldrovandi
Journal:  J Clin Microbiol       Date:  2009-07-22       Impact factor: 5.948

4.  Cross-contamination during processing of dried blood spots used for rapid diagnosis of HIV-1 infection of infants is rare and avoidable.

Authors:  Caroline Mitchell; Kelli Kraft; Do Peterson; Lisa Frenkel
Journal:  J Virol Methods       Date:  2009-10-28       Impact factor: 2.014

5.  Stability of Human Immunodeficiency Virus Serological Markers in Samples Collected as HemaSpot and Whatman 903 Dried Blood Spots.

Authors:  Mark M Manak; Holly R Hack; Ashley L Shutt; Brook A Danboise; Linda L Jagodzinski; Sheila A Peel
Journal:  J Clin Microbiol       Date:  2018-09-25       Impact factor: 5.948

6.  Single genome amplification of proviral HIV-1 DNA from dried blood spot specimens collected during early infant screening programs in Lusaka, Zambia.

Authors:  Lillian Seu; Innocent Mwape; M Bradford Guffey
Journal:  J Virol Methods       Date:  2014-03-22       Impact factor: 2.014

7.  Diagnosis of HIV-1 infection in infants using dried blood spots in Tamil Nadu, South India.

Authors:  D Anitha; S Mini Jacob; A Ganesan; K Mary Sushi
Journal:  Indian J Sex Transm Dis AIDS       Date:  2011-07

Review 8.  Dried Blood Spots for Global Health Diagnostics and Surveillance: Opportunities and Challenges.

Authors:  Mark D Lim
Journal:  Am J Trop Med Hyg       Date:  2018-06-28       Impact factor: 2.345

9.  Antiviral resistance and correlates of virologic failure in the first cohort of HIV-infected children gaining access to structured antiretroviral therapy in Lima, Peru: a cross-sectional analysis.

Authors:  Barbara A Rath; Max von Kleist; Maria E Castillo; Lenka Kolevic; Patricia Caballero; Giselle Soto-Castellares; Angela M Amedee; James E Robinson; David K Katzenstein; Russell B Van Dyke; Richard A Oberhelman
Journal:  BMC Infect Dis       Date:  2013-01-02       Impact factor: 3.090

10.  Utilization of archived neonatal dried blood spots for genome-wide genotyping.

Authors:  Pagna Sok; Philip J Lupo; Melissa A Richard; Karen R Rabin; Erik A Ehli; Noah A Kallsen; Gareth E Davies; Michael E Scheurer; Austin L Brown
Journal:  PLoS One       Date:  2020-02-21       Impact factor: 3.240

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