Literature DB >> 18611963

A role for Q/N-rich aggregation-prone regions in P-body localization.

Martin A M Reijns1, Ross D Alexander, Michael P Spiller, Jean D Beggs.   

Abstract

P-bodies are cytoplasmic foci that are sites of mRNA degradation and translational repression. It is not known what causes the accumulation of RNA-degradation factors in P-bodies, although RNA is required. The yeast Lsm1-7p complex (comprising Lsm1p to Lsm7p) is recruited to P-bodies under certain stress conditions. It is required for efficient decapping and degradation of mRNAs, but not for the assembly of P-bodies. Here we show that the Lsm4p subunit and its asparagine-rich C-terminus are prone to aggregation, and that this tendency to aggregate promotes efficient accumulation of Lsm1-7p in P-bodies. The presence of glutamine- and/or asparagine-rich (Q/N-rich) regions in other P-body components suggests a more general role for aggregation-prone residues in P-body localization and assembly. This is supported by reduced P-body accumulation of Ccr4p, Pop2p and Dhh1p after deletion of these domains, and by the observed aggregation of the Q/N-rich region from Ccr4p.

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Year:  2008        PMID: 18611963      PMCID: PMC2680509          DOI: 10.1242/jcs.024976

Source DB:  PubMed          Journal:  J Cell Sci        ISSN: 0021-9533            Impact factor:   5.285


  46 in total

1.  Sm and Sm-like proteins assemble in two related complexes of deep evolutionary origin.

Authors:  J Salgado-Garrido; E Bragado-Nilsson; S Kandels-Lewis; B Séraphin
Journal:  EMBO J       Date:  1999-06-15       Impact factor: 11.598

2.  A doughnut-shaped heteromer of human Sm-like proteins binds to the 3'-end of U6 snRNA, thereby facilitating U4/U6 duplex formation in vitro.

Authors:  T Achsel; H Brahms; B Kastner; A Bachi; M Wilm; R Lührmann
Journal:  EMBO J       Date:  1999-10-15       Impact factor: 11.598

3.  Stress granule assembly is mediated by prion-like aggregation of TIA-1.

Authors:  Natalie Gilks; Nancy Kedersha; Maranatha Ayodele; Lily Shen; Georg Stoecklin; Laura M Dember; Paul Anderson
Journal:  Mol Biol Cell       Date:  2004-09-15       Impact factor: 4.138

4.  Processing bodies require RNA for assembly and contain nontranslating mRNAs.

Authors:  Daniela Teixeira; Ujwal Sheth; Marco A Valencia-Sanchez; Muriel Brengues; Roy Parker
Journal:  RNA       Date:  2005-02-09       Impact factor: 4.942

5.  CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice.

Authors:  J D Thompson; D G Higgins; T J Gibson
Journal:  Nucleic Acids Res       Date:  1994-11-11       Impact factor: 16.971

6.  Characterization of Sm-like proteins in yeast and their association with U6 snRNA.

Authors:  A E Mayes; L Verdone; P Legrain; J D Beggs
Journal:  EMBO J       Date:  1999-08-02       Impact factor: 11.598

7.  A role for the yeast La protein in U6 snRNP assembly: evidence that the La protein is a molecular chaperone for RNA polymerase III transcripts.

Authors:  B K Pannone; D Xue; S L Wolin
Journal:  EMBO J       Date:  1998-12-15       Impact factor: 11.598

8.  Sm and Sm-like proteins belong to a large family: identification of proteins of the U6 as well as the U1, U2, U4 and U5 snRNPs.

Authors:  B Séraphin
Journal:  EMBO J       Date:  1995-05-01       Impact factor: 11.598

9.  Identification and characterization of Uss1p (Sdb23p): a novel U6 snRNA-associated protein with significant similarity to core proteins of small nuclear ribonucleoproteins.

Authors:  M Cooper; L H Johnston; J D Beggs
Journal:  EMBO J       Date:  1995-05-01       Impact factor: 11.598

10.  snRNP Sm proteins share two evolutionarily conserved sequence motifs which are involved in Sm protein-protein interactions.

Authors:  H Hermann; P Fabrizio; V A Raker; K Foulaki; H Hornig; H Brahms; R Lührmann
Journal:  EMBO J       Date:  1995-05-01       Impact factor: 11.598

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  126 in total

Review 1.  P-bodies and stress granules: possible roles in the control of translation and mRNA degradation.

Authors:  Carolyn J Decker; Roy Parker
Journal:  Cold Spring Harb Perspect Biol       Date:  2012-09-01       Impact factor: 10.005

Review 2.  Stress granules and cell signaling: more than just a passing phase?

Authors:  Nancy Kedersha; Pavel Ivanov; Paul Anderson
Journal:  Trends Biochem Sci       Date:  2013-09-10       Impact factor: 13.807

3.  PRMT5 and the role of symmetrical dimethylarginine in chromatoid bodies of planarian stem cells.

Authors:  Labib Rouhana; Ana P Vieira; Rachel H Roberts-Galbraith; Phillip A Newmark
Journal:  Development       Date:  2012-02-08       Impact factor: 6.868

Review 4.  RNA granules: post-transcriptional and epigenetic modulators of gene expression.

Authors:  Paul Anderson; Nancy Kedersha
Journal:  Nat Rev Mol Cell Biol       Date:  2009-06       Impact factor: 94.444

5.  Role of p54 RNA helicase activity and its C-terminal domain in translational repression, P-body localization and assembly.

Authors:  Nicola Minshall; Michel Kress; Dominique Weil; Nancy Standart
Journal:  Mol Biol Cell       Date:  2009-03-18       Impact factor: 4.138

Review 6.  Synaptic control of local translation: the plot thickens with new characters.

Authors:  María Gabriela Thomas; Malena Lucía Pascual; Darío Maschi; Luciana Luchelli; Graciela Lidia Boccaccio
Journal:  Cell Mol Life Sci       Date:  2013-11-10       Impact factor: 9.261

7.  Functional role of Tia1/Pub1 and Sup35 prion domains: directing protein synthesis machinery to the tubulin cytoskeleton.

Authors:  Xiang Li; Joseph B Rayman; Eric R Kandel; Irina L Derkatch
Journal:  Mol Cell       Date:  2014-06-26       Impact factor: 17.970

Review 8.  Deadenylation and P-bodies.

Authors:  Chyi-Ying A Chen; Ann-Bin Shyu
Journal:  Adv Exp Med Biol       Date:  2013       Impact factor: 2.622

9.  LSM proteins provide accurate splicing and decay of selected transcripts to ensure normal Arabidopsis development.

Authors:  Carlos Perea-Resa; Tamara Hernández-Verdeja; Rosa López-Cobollo; María del Mar Castellano; Julio Salinas
Journal:  Plant Cell       Date:  2012-12-07       Impact factor: 11.277

10.  Analysis of Lsm1p and Lsm8p domains in the cellular localization of Lsm complexes in budding yeast.

Authors:  Martin A M Reijns; Tatsiana Auchynnikava; Jean D Beggs
Journal:  FEBS J       Date:  2009-05-20       Impact factor: 5.542

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