Literature DB >> 19461665

RNA granules: post-transcriptional and epigenetic modulators of gene expression.

Paul Anderson1, Nancy Kedersha.   

Abstract

The composition of cytoplasmic messenger ribonucleoproteins (mRNPs) is determined by their nuclear and cytoplasmic histories and reflects past functions and future fates. The protein components of selected mRNP complexes promote their assembly into microscopically visible cytoplasmic RNA granules, including stress granules, processing bodies and germ cell (or polar) granules. We propose that RNA granules can be both a cause and a consequence of altered mRNA translation, decay or editing. In this capacity, RNA granules serve as key modulators of post-transcriptional and epigenetic gene expression.

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Year:  2009        PMID: 19461665     DOI: 10.1038/nrm2694

Source DB:  PubMed          Journal:  Nat Rev Mol Cell Biol        ISSN: 1471-0072            Impact factor:   94.444


  77 in total

1.  Stress granule assembly is mediated by prion-like aggregation of TIA-1.

Authors:  Natalie Gilks; Nancy Kedersha; Maranatha Ayodele; Lily Shen; Georg Stoecklin; Laura M Dember; Paul Anderson
Journal:  Mol Biol Cell       Date:  2004-09-15       Impact factor: 4.138

2.  Multiple processing body factors and the ARE binding protein TTP activate mRNA decapping.

Authors:  Martin Fenger-Grøn; Christy Fillman; Bodil Norrild; Jens Lykke-Andersen
Journal:  Mol Cell       Date:  2005-12-22       Impact factor: 17.970

Review 3.  P bodies: at the crossroads of post-transcriptional pathways.

Authors:  Ana Eulalio; Isabelle Behm-Ansmant; Elisa Izaurralde
Journal:  Nat Rev Mol Cell Biol       Date:  2007-01       Impact factor: 94.444

4.  P-body formation is a consequence, not the cause, of RNA-mediated gene silencing.

Authors:  Ana Eulalio; Isabelle Behm-Ansmant; Daniel Schweizer; Elisa Izaurralde
Journal:  Mol Cell Biol       Date:  2007-04-02       Impact factor: 4.272

Review 5.  Messenger RNA regulation: to translate or to degrade.

Authors:  Ann-Bin Shyu; Miles F Wilkinson; Ambro van Hoof
Journal:  EMBO J       Date:  2008-02-06       Impact factor: 11.598

6.  Distinct structural features of caprin-1 mediate its interaction with G3BP-1 and its induction of phosphorylation of eukaryotic translation initiation factor 2alpha, entry to cytoplasmic stress granules, and selective interaction with a subset of mRNAs.

Authors:  Samuel Solomon; Yaoxian Xu; Bin Wang; Muriel D David; Peter Schubert; Derek Kennedy; John W Schrader
Journal:  Mol Cell Biol       Date:  2007-01-08       Impact factor: 4.272

7.  Formation of GW bodies is a consequence of microRNA genesis.

Authors:  Kaleb M Pauley; Theophany Eystathioy; Andrew Jakymiw; John C Hamel; Marvin J Fritzler; Edward K L Chan
Journal:  EMBO Rep       Date:  2006-08-11       Impact factor: 8.807

8.  The deacetylase HDAC6 is a novel critical component of stress granules involved in the stress response.

Authors:  Sohee Kwon; Yu Zhang; Patrick Matthias
Journal:  Genes Dev       Date:  2007-12-15       Impact factor: 11.361

9.  RNA-binding proteins TIA-1 and TIAR link the phosphorylation of eIF-2 alpha to the assembly of mammalian stress granules.

Authors:  N L Kedersha; M Gupta; W Li; I Miller; P Anderson
Journal:  J Cell Biol       Date:  1999-12-27       Impact factor: 10.539

10.  Inosine-containing dsRNA binds a stress-granule-like complex and downregulates gene expression in trans.

Authors:  A D J Scadden
Journal:  Mol Cell       Date:  2007-11-09       Impact factor: 17.970

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  388 in total

1.  Dynamics of native β-actin mRNA transport in the cytoplasm.

Authors:  Aaron W Lifland; Chiara Zurla; Joana Yu; Philip J Santangelo
Journal:  Traffic       Date:  2011-05-18       Impact factor: 6.215

2.  Cytoplasmic Arabidopsis AGO7 accumulates in membrane-associated siRNA bodies and is required for ta-siRNA biogenesis.

Authors:  Virginie Jouannet; Ana Beatriz Moreno; Taline Elmayan; Hervé Vaucheret; Martin D Crespi; Alexis Maizel
Journal:  EMBO J       Date:  2012-02-10       Impact factor: 11.598

Review 3.  New insights into the regulation of RNP granule assembly in oocytes.

Authors:  Jennifer A Schisa
Journal:  Int Rev Cell Mol Biol       Date:  2012       Impact factor: 6.813

4.  From cis-regulatory elements to complex RNPs and back.

Authors:  Fátima Gebauer; Thomas Preiss; Matthias W Hentze
Journal:  Cold Spring Harb Perspect Biol       Date:  2012-07-01       Impact factor: 10.005

5.  Coil-in-to snRNP assembly and Cajal bodies.

Authors:  Je-Hyun Yoon; Roy Parker
Journal:  Nat Struct Mol Biol       Date:  2010-04       Impact factor: 15.369

6.  The C. elegans homolog of nucleoporin Nup98 is required for the integrity and function of germline P granules.

Authors:  Ekaterina Voronina; Geraldine Seydoux
Journal:  Development       Date:  2010-03-24       Impact factor: 6.868

7.  DDX6 recruits translational silenced human reticulocyte 15-lipoxygenase mRNA to RNP granules.

Authors:  Isabel S Naarmann; Christiane Harnisch; Gerhard Müller-Newen; Henning Urlaub; Antje Ostareck-Lederer; Dirk H Ostareck
Journal:  RNA       Date:  2010-09-30       Impact factor: 4.942

8.  Quantitative mass spectrometry of DENV-2 RNA-interacting proteins reveals that the DEAD-box RNA helicase DDX6 binds the DB1 and DB2 3' UTR structures.

Authors:  Alex Michael Ward; Katell Bidet; Ang Yinglin; Siok Ghee Ler; Kelly Hogue; Walter Blackstock; Jayantha Gunaratne; Mariano A Garcia-Blanco
Journal:  RNA Biol       Date:  2011-11-01       Impact factor: 4.652

Review 9.  Inflammation: cytokines and RNA-based regulation.

Authors:  Deborah J Stumpo; Wi S Lai; Perry J Blackshear
Journal:  Wiley Interdiscip Rev RNA       Date:  2010-05-06       Impact factor: 9.957

Review 10.  Effects of stress and aging on ribonucleoprotein assembly and function in the germ line.

Authors:  Jennifer A Schisa
Journal:  Wiley Interdiscip Rev RNA       Date:  2013-11-13       Impact factor: 9.957

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