Literature DB >> 21606338

Structural basis of photosensitivity in a bacterial light-oxygen-voltage/helix-turn-helix (LOV-HTH) DNA-binding protein.

Abigail I Nash1, Reginald McNulty, Mary Elizabeth Shillito, Trevor E Swartz, Roberto A Bogomolni, Hartmut Luecke, Kevin H Gardner.   

Abstract

Light-oxygen-voltage (LOV) domains are blue light-activated signaling modules integral to a wide range of photosensory proteins. Upon illumination, LOV domains form internal protein-flavin adducts that generate conformational changes which control effector function. Here we advance our understanding of LOV regulation with structural, biophysical, and biochemical studies of EL222, a light-regulated DNA-binding protein. The dark-state crystal structure reveals interactions between the EL222 LOV and helix-turn-helix domains that we show inhibit DNA binding. Solution biophysical data indicate that illumination breaks these interactions, freeing the LOV and helix-turn-helix domains of each other. This conformational change has a key functional effect, allowing EL222 to bind DNA in a light-dependent manner. Our data reveal a conserved signaling mechanism among diverse LOV-containing proteins, where light-induced conformational changes trigger activation via a conserved interaction surface.

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Year:  2011        PMID: 21606338      PMCID: PMC3111320          DOI: 10.1073/pnas.1100262108

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  47 in total

1.  NMR experiments for the study of photointermediates: application to the photoactive yellow protein.

Authors:  G Rubinstenn; G W Vuister; N Zwanenburg; K J Hellingwerf; R Boelens; R Kaptein
Journal:  J Magn Reson       Date:  1999-04       Impact factor: 2.229

2.  The LOV domain family: photoresponsive signaling modules coupled to diverse output domains.

Authors:  Sean Crosson; Sudarshan Rajagopal; Keith Moffat
Journal:  Biochemistry       Date:  2003-01-14       Impact factor: 3.162

3.  Disruption of the LOV-Jalpha helix interaction activates phototropin kinase activity.

Authors:  Shannon M Harper; John M Christie; Kevin H Gardner
Journal:  Biochemistry       Date:  2004-12-28       Impact factor: 3.162

4.  Structure of the Escherichia coli response regulator NarL.

Authors:  I Baikalov; I Schröder; M Kaczor-Grzeskowiak; K Grzeskowiak; R P Gunsalus; R E Dickerson
Journal:  Biochemistry       Date:  1996-08-27       Impact factor: 3.162

5.  Protein backbone angle restraints from searching a database for chemical shift and sequence homology.

Authors:  G Cornilescu; F Delaglio; A Bax
Journal:  J Biomol NMR       Date:  1999-03       Impact factor: 2.835

6.  Arabidopsis NPH1: a protein kinase with a putative redox-sensing domain.

Authors:  E Huala; P W Oeller; E Liscum; I S Han; E Larsen; W R Briggs
Journal:  Science       Date:  1997-12-19       Impact factor: 47.728

7.  The quorum-sensing transcriptional regulator TraR requires its cognate signaling ligand for protein folding, protease resistance, and dimerization.

Authors:  J Zhu; S C Winans
Journal:  Proc Natl Acad Sci U S A       Date:  2001-02-13       Impact factor: 11.205

8.  Surface sites for engineering allosteric control in proteins.

Authors:  Jeeyeon Lee; Madhusudan Natarajan; Vishal C Nashine; Michael Socolich; Tina Vo; William P Russ; Stephen J Benkovic; Rama Ranganathan
Journal:  Science       Date:  2008-10-17       Impact factor: 47.728

9.  Phosphorylation and dephosphorylation catalyzed in vitro by purified components of the nitrate sensing system, NarX and NarL.

Authors:  M S Walker; J A DeMoss
Journal:  J Biol Chem       Date:  1993-04-25       Impact factor: 5.157

10.  Conformational switching in the fungal light sensor Vivid.

Authors:  Brian D Zoltowski; Carsten Schwerdtfeger; Joanne Widom; Jennifer J Loros; Alexandrine M Bilwes; Jay C Dunlap; Brian R Crane
Journal:  Science       Date:  2007-05-18       Impact factor: 47.728

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  69 in total

1.  An Open-Source Plate Reader.

Authors:  Karol P Szymula; Michael S Magaraci; Michael Patterson; Andrew Clark; Sevile G Mannickarottu; Brian Y Chow
Journal:  Biochemistry       Date:  2018-12-18       Impact factor: 3.162

Review 2.  Blue-light-regulated transcription factor, Aureochrome, in photosynthetic stramenopiles.

Authors:  Fumio Takahashi
Journal:  J Plant Res       Date:  2016-01-18       Impact factor: 2.629

3.  Blue light-induced dimerization of a bacterial LOV-HTH DNA-binding protein.

Authors:  Brian D Zoltowski; Laura B Motta-Mena; Kevin H Gardner
Journal:  Biochemistry       Date:  2013-09-12       Impact factor: 3.162

4.  Blue light-mediated transcriptional activation and repression of gene expression in bacteria.

Authors:  Premkumar Jayaraman; Kavya Devarajan; Tze Kwang Chua; Hanzhong Zhang; Erry Gunawan; Chueh Loo Poh
Journal:  Nucleic Acids Res       Date:  2016-06-28       Impact factor: 16.971

5.  Amino acid residues of RegA important for interactions with the CbbR-DNA complex of Rhodobacter sphaeroides.

Authors:  Andrew W Dangel; Amanda Luther; F Robert Tabita
Journal:  J Bacteriol       Date:  2014-06-23       Impact factor: 3.490

6.  In-cell infrared difference spectroscopy of LOV photoreceptors reveals structural responses to light altered in living cells.

Authors:  Lukas Goett-Zink; Jessica L Klocke; Lena A K Bögeholz; Tilman Kottke
Journal:  J Biol Chem       Date:  2020-06-24       Impact factor: 5.157

7.  TAEL: a zebrafish-optimized optogenetic gene expression system with fine spatial and temporal control.

Authors:  Anna Reade; Laura B Motta-Mena; Kevin H Gardner; Didier Y Stainier; Orion D Weiner; Stephanie Woo
Journal:  Development       Date:  2016-12-19       Impact factor: 6.868

Review 8.  Synthetic Switches and Regulatory Circuits in Plants.

Authors:  Jennifer Andres; Tim Blomeier; Matias D Zurbriggen
Journal:  Plant Physiol       Date:  2019-01-28       Impact factor: 8.340

9.  Light-induced subunit dissociation by a light-oxygen-voltage domain photoreceptor from Rhodobacter sphaeroides.

Authors:  Karen S Conrad; Alexandrine M Bilwes; Brian R Crane
Journal:  Biochemistry       Date:  2013-01-03       Impact factor: 3.162

Review 10.  Optogenetic control of cell function using engineered photoreceptors.

Authors:  Gopal P Pathak; Justin D Vrana; Chandra L Tucker
Journal:  Biol Cell       Date:  2012-12-21       Impact factor: 4.458

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