Literature DB >> 16459078

Structural biology of cellular machines.

Wah Chiu1, Matthew L Baker, Steven C Almo.   

Abstract

Multi-component macromolecular machines contribute to all essential biological processes, from cell motility and signal transduction to information storage and processing. Structural analysis of assemblies at atomic resolution is emerging as the field of structural cell biology. Several recent studies, including those focused on the ribosome, the acrosomal bundle and bacterial flagella, have demonstrated the ability of a hybrid approach that combines imaging, crystallography and computational tools to generate testable atomic models of fundamental biological machines. A complete understanding of cellular and systems biology will require the detailed structural understanding of hundreds of biological machines. The realization of this goal demands a concerted effort to develop and apply new strategies for the systematic identification, isolation, structural characterization and mechanistic analysis of multi-component assemblies at all resolution ranges. The establishment of a database describing the structural and dynamic properties of protein assemblies will provide novel opportunities to define the molecular and atomic mechanisms controlling overall cell physiology.

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Year:  2006        PMID: 16459078     DOI: 10.1016/j.tcb.2006.01.002

Source DB:  PubMed          Journal:  Trends Cell Biol        ISSN: 0962-8924            Impact factor:   20.808


  22 in total

1.  Constructing and validating initial Cα models from subnanometer resolution density maps with pathwalking.

Authors:  Mariah R Baker; Ian Rees; Steven J Ludtke; Wah Chiu; Matthew L Baker
Journal:  Structure       Date:  2012-03-07       Impact factor: 5.006

2.  Out-of-equilibrium conformational cycling of GroEL under saturating ATP concentrations.

Authors:  Gabriel A Frank; Mila Goomanovsky; Amit Davidi; Guy Ziv; Amnon Horovitz; Gilad Haran
Journal:  Proc Natl Acad Sci U S A       Date:  2010-03-22       Impact factor: 11.205

3.  Identification of secondary structure elements in intermediate-resolution density maps.

Authors:  Matthew L Baker; Tao Ju; Wah Chiu
Journal:  Structure       Date:  2007-01       Impact factor: 5.006

4.  Modeling of protein binary complexes using structural mass spectrometry data.

Authors:  J K Amisha Kamal; Mark R Chance
Journal:  Protein Sci       Date:  2007-11-27       Impact factor: 6.725

5.  Energetics and geometry of FtsZ polymers: nucleated self-assembly of single protofilaments.

Authors:  Sonia Huecas; Oscar Llorca; Jasminka Boskovic; Jaime Martín-Benito; José María Valpuesta; José Manuel Andreu
Journal:  Biophys J       Date:  2007-11-16       Impact factor: 4.033

Review 6.  The neurobiologist's guide to structural biology: a primer on why macromolecular structure matters and how to evaluate structural data.

Authors:  Daniel L Minor
Journal:  Neuron       Date:  2007-05-24       Impact factor: 17.173

7.  Novel multiprotein complexes identified in the hyperthermophilic archaeon Pyrococcus furiosus by non-denaturing fractionation of the native proteome.

Authors:  Angeli Lal Menon; Farris L Poole; Aleksandar Cvetkovic; Sunia A Trauger; Ewa Kalisiak; Joseph W Scott; Saratchandra Shanmukh; Jeremy Praissman; Francis E Jenney; William R Wikoff; John V Apon; Gary Siuzdak; Michael W W Adams
Journal:  Mol Cell Proteomics       Date:  2008-11-28       Impact factor: 5.911

8.  Design of an optical switch for studying conformational dynamics in individual molecules of GroEL.

Authors:  Gabriel A Frank; Yakov Kipnis; Elena Smolensky; Shirley S Daube; Amnon Horovitz; Gilad Haran
Journal:  Bioconjug Chem       Date:  2008-06-24       Impact factor: 4.774

9.  The reducible complexity of a mitochondrial molecular machine.

Authors:  Abigail Clements; Dejan Bursac; Xenia Gatsos; Andrew J Perry; Srgjan Civciristov; Nermin Celik; Vladimir A Likic; Sebastian Poggio; Christine Jacobs-Wagner; Richard A Strugnell; Trevor Lithgow
Journal:  Proc Natl Acad Sci U S A       Date:  2009-08-26       Impact factor: 11.205

10.  Three-dimensional EM structure of an intact activator-dependent transcription initiation complex.

Authors:  Brian P Hudson; Joel Quispe; Samuel Lara-González; Younggyu Kim; Helen M Berman; Eddy Arnold; Richard H Ebright; Catherine L Lawson
Journal:  Proc Natl Acad Sci U S A       Date:  2009-11-10       Impact factor: 11.205

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