Literature DB >> 18567631

Bilayer edge and curvature effects on partitioning of lipids by tail length: atomistic simulations.

Hao Wang1, Jason de Joannis, Yong Jiang, Jeffrey C Gaulding, Birgit Albrecht, Fuchang Yin, Kunal Khanna, James T Kindt.   

Abstract

The partitioning of lipids among different microenvironments in a bilayer is of considerable relevance to characterization of composition variations in biomembranes. Atomistic simulation has been ill-suited to model equilibrated lipid mixtures because the time required for diffusive exchange of lipids among microenvironments exceeds typical submicrosecond molecular dynamics trajectories. A method to facilitate local composition fluctuations, using Monte Carlo mutations to change lipid structures within the semigrand-canonical ensemble (at a fixed difference in component chemical potentials, Deltamu), was recently implemented to address this challenge. This technique was applied here to mixtures of dimyristoylphosphatidylcholine and a shorter-tail lipid, either symmetric (didecanoylphosphatidylcholine (DDPC)) or asymmetric (hexanoyl-myristoylphosphatidylcholine), arranged in two types of structure: bilayer ribbons and buckled bilayers. In ribbons, the shorter-tail component showed a clear enrichment at the highly curved rim, more so for hexanoyl-myristoylphosphatidylcholine than for DDPC. Results on buckled bilayers were variable. Overall, the DDPC content of buckled bilayers tended to exceed by several percent the DDPC content of flat ones simulated at the same Deltamu, but only for mixtures with low overall DDPC content. Within the buckled bilayer structure, no correlation could be resolved between the sign or magnitude of the local curvature of a leaflet and the mean local lipid composition. Results are discussed in terms of packing constraints, surface area/volume ratios, and curvature elasticity.

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Year:  2008        PMID: 18567631      PMCID: PMC2527244          DOI: 10.1529/biophysj.108.131409

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  30 in total

1.  Nucleation free energy of pore formation in an amphiphilic bilayer studied by molecular dynamics simulations.

Authors:  T V Tolpekina; W K den Otter; W J Briels
Journal:  J Chem Phys       Date:  2004-12-15       Impact factor: 3.488

2.  Free energy of a trans-membrane pore calculated from atomistic molecular dynamics simulations.

Authors:  J Wohlert; W K den Otter; O Edholm; W J Briels
Journal:  J Chem Phys       Date:  2006-04-21       Impact factor: 3.488

3.  Critical fluctuations in domain-forming lipid mixtures.

Authors:  Sarah L Veatch; Olivier Soubias; Sarah L Keller; Klaus Gawrisch
Journal:  Proc Natl Acad Sci U S A       Date:  2007-10-25       Impact factor: 11.205

4.  Packing constraints and electrostatic surface potentials determine transmembrane asymmetry of phosphatidylethanol.

Authors:  A V Victorov; N Janes; T F Taraschi; J B Hoek
Journal:  Biophys J       Date:  1997-06       Impact factor: 4.033

5.  Effect of chain length and unsaturation on elasticity of lipid bilayers.

Authors:  W Rawicz; K C Olbrich; T McIntosh; D Needham; E Evans
Journal:  Biophys J       Date:  2000-07       Impact factor: 4.033

6.  Reinvestigation by phosphorus NMR of lipid distribution in bicelles.

Authors:  Mohamed N Triba; Dror E Warschawski; Philippe F Devaux
Journal:  Biophys J       Date:  2004-12-30       Impact factor: 4.033

7.  Magnetically alignable phase of phospholipid "bicelle" mixtures is a chiral nematic made up of wormlike micelles.

Authors:  Mu-Ping Nieh; V A Raghunathan; Charles J Glinka; Thad A Harroun; Georg Pabst; John Katsaras
Journal:  Langmuir       Date:  2004-09-14       Impact factor: 3.882

8.  Characterization of magnetically orientable bilayers in mixtures of dihexanoylphosphatidylcholine and dimyristoylphosphatidylcholine by solid-state NMR.

Authors:  C R Sanders; J P Schwonek
Journal:  Biochemistry       Date:  1992-09-22       Impact factor: 3.162

9.  Lipid tail chain asymmetry and the strength of membrane-induced interactions between membrane proteins.

Authors:  Nily Dan
Journal:  Biochim Biophys Acta       Date:  2007-05-22

10.  How synaptotagmin promotes membrane fusion.

Authors:  Sascha Martens; Michael M Kozlov; Harvey T McMahon
Journal:  Science       Date:  2007-05-03       Impact factor: 47.728

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  10 in total

1.  Anisotropic Membrane Curvature Sensing by Amphipathic Peptides.

Authors:  Jordi Gómez-Llobregat; Federico Elías-Wolff; Martin Lindén
Journal:  Biophys J       Date:  2016-01-05       Impact factor: 4.033

2.  Association of the endosomal sorting complex ESCRT-II with the Vps20 subunit of ESCRT-III generates a curvature-sensitive complex capable of nucleating ESCRT-III filaments.

Authors:  Ian Fyfe; Amber L Schuh; J Michael Edwardson; Anjon Audhya
Journal:  J Biol Chem       Date:  2011-08-11       Impact factor: 5.157

3.  Exploring the impact of proteins on the line tension of a phase-separating ternary lipid mixture.

Authors:  Asanga Bandara; Afra Panahi; George A Pantelopulos; Tetsuro Nagai; John E Straub
Journal:  J Chem Phys       Date:  2019-05-28       Impact factor: 3.488

4.  A comparison of coarse-grained and continuum models for membrane bending in lipid bilayer fusion pores.

Authors:  Jejoong Yoo; Meyer B Jackson; Qiang Cui
Journal:  Biophys J       Date:  2013-02-19       Impact factor: 4.033

5.  Atomistic simulations of bicelle mixtures.

Authors:  Yong Jiang; Hao Wang; James T Kindt
Journal:  Biophys J       Date:  2010-06-16       Impact factor: 4.033

6.  Hydrophobic mismatch and lipid sorting near OmpA in mixed bilayers: atomistic and coarse-grained simulations.

Authors:  Fuchang Yin; James T Kindt
Journal:  Biophys J       Date:  2012-05-15       Impact factor: 4.033

7.  Changes in lipid density induce membrane curvature.

Authors:  Armando J de Jesus; Noah Kastelowitz; Hang Yin
Journal:  RSC Adv       Date:  2013-09-07       Impact factor: 3.361

Review 8.  When detergent meets bilayer: birth and coming of age of lipid bicelles.

Authors:  Ulrich H N Dürr; Ronald Soong; Ayyalusamy Ramamoorthy
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2013-01-23       Impact factor: 9.795

Review 9.  Artificial Lipid Membranes: Past, Present, and Future.

Authors:  Christina G Siontorou; Georgia-Paraskevi Nikoleli; Dimitrios P Nikolelis; Stefanos K Karapetis
Journal:  Membranes (Basel)       Date:  2017-07-26

10.  Molecular mechanism of the synaptotagmin-SNARE interaction in Ca2+-triggered vesicle fusion.

Authors:  Marija Vrljic; Pavel Strop; James A Ernst; R Bryan Sutton; Steven Chu; Axel T Brunger
Journal:  Nat Struct Mol Biol       Date:  2010-02-21       Impact factor: 15.369

  10 in total

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