Literature DB >> 20550902

Atomistic simulations of bicelle mixtures.

Yong Jiang1, Hao Wang, James T Kindt.   

Abstract

Mixtures of long- and short-tail phosphatidylcholine lipids are known to self-assemble into a variety of aggregates combining flat bilayerlike and curved micellelike features, commonly called bicelles. Atomistic simulations of bilayer ribbons and perforated bilayers containing dimyristoylphosphatidylcholine (DMPC, di-C(14) tails) and dihexanoylphosphatidylcholine (DHPC, di-C(6) tails) have been carried out to investigate the partitioning of these components between flat and curved microenvironments and the stabilization of the bilayer edge by DHPC. To approach equilibrium partitioning of lipids on an achievable simulation timescale, configuration-bias Monte Carlo mutation moves were used to allow individual lipids to change tail length within a semigrand-canonical ensemble. Since acceptance probabilities for direct transitions between DMPC and DHPC were negligible, a third component with intermediate tail length (didecanoylphosphatidylcholine, di-C(10) tails) was included at a low concentration to serve as an intermediate for transitions between DMPC and DHPC. Strong enrichment of DHPC is seen at ribbon and pore edges, with an excess linear density of approximately 3 nm(-1). The simulation model yields estimates for the onset of edge stability with increasing bilayer DHPC content between 5% and 15% DHPC at 300 K and between 7% and 17% DHPC at 323 K, higher than experimental estimates. Local structure and composition at points of close contact between pores suggest a possible mechanism for effective attractions between pores, providing a rationalization for the tendency of bicelle mixtures to aggregate into perforated vesicles and perforated sheets. (c) 2010 Biophysical Society. Published by Elsevier Inc. All rights reserved.

Entities:  

Mesh:

Substances:

Year:  2010        PMID: 20550902      PMCID: PMC2884235          DOI: 10.1016/j.bpj.2010.03.042

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  37 in total

1.  Cascades of transient pores in giant vesicles: line tension and transport.

Authors:  Erdem Karatekin; Olivier Sandre; Hicham Guitouni; Nicolas Borghi; Pierre-Henri Puech; Françoise Brochard-Wyart
Journal:  Biophys J       Date:  2003-03       Impact factor: 4.033

2.  Nucleation free energy of pore formation in an amphiphilic bilayer studied by molecular dynamics simulations.

Authors:  T V Tolpekina; W K den Otter; W J Briels
Journal:  J Chem Phys       Date:  2004-12-15       Impact factor: 3.488

3.  Crystallization of bacteriorhodopsin from bicelle formulations at room temperature.

Authors:  Salem Faham; Gabriella L Boulting; Elizabeth A Massey; Sarah Yohannan; Dawn Yang; James U Bowie
Journal:  Protein Sci       Date:  2005-02-02       Impact factor: 6.725

4.  Free energy of a trans-membrane pore calculated from atomistic molecular dynamics simulations.

Authors:  J Wohlert; W K den Otter; O Edholm; W J Briels
Journal:  J Chem Phys       Date:  2006-04-21       Impact factor: 3.488

5.  Physical chemical studies of short-chain lecithin homologues. 3. Phase separation and light scattering studies on aqueous dioctanoyllecithin solutions.

Authors:  R J Tausk; C Oudshoorn; J T Overbeek
Journal:  Biophys Chem       Date:  1974-06       Impact factor: 2.352

6.  Reinvestigation by phosphorus NMR of lipid distribution in bicelles.

Authors:  Mohamed N Triba; Dror E Warschawski; Philippe F Devaux
Journal:  Biophys J       Date:  2004-12-30       Impact factor: 4.033

7.  Magnetically alignable phase of phospholipid "bicelle" mixtures is a chiral nematic made up of wormlike micelles.

Authors:  Mu-Ping Nieh; V A Raghunathan; Charles J Glinka; Thad A Harroun; Georg Pabst; John Katsaras
Journal:  Langmuir       Date:  2004-09-14       Impact factor: 3.882

8.  Characterization of magnetically orientable bilayers in mixtures of dihexanoylphosphatidylcholine and dimyristoylphosphatidylcholine by solid-state NMR.

Authors:  C R Sanders; J P Schwonek
Journal:  Biochemistry       Date:  1992-09-22       Impact factor: 3.162

9.  Atomistic simulations of mixed-lipid bilayers in gel and fluid phases.

Authors:  Patrick S Coppock; James T Kindt
Journal:  Langmuir       Date:  2009-01-06       Impact factor: 3.882

10.  Water diffusion in bicelles and the mixed bicelle model.

Authors:  Ronald Soong; Peter M Macdonald
Journal:  Langmuir       Date:  2009-01-06       Impact factor: 3.882

View more
  6 in total

1.  Inside-outside self-assembly of light-activated fast-release liposomes.

Authors:  Natalie Forbes; Jeong Eun Shin; Maria Ogunyankin; Joseph A Zasadzinski
Journal:  Phys Chem Chem Phys       Date:  2015-03-02       Impact factor: 3.676

2.  Antimicrobial Peptides Share a Common Interaction Driven by Membrane Line Tension Reduction.

Authors:  J Michael Henderson; Alan J Waring; Frances Separovic; Ka Yee C Lee
Journal:  Biophys J       Date:  2016-11-15       Impact factor: 4.033

3.  Rapid, Reversible Release from Thermosensitive Liposomes Triggered by Near-Infra-Red Light.

Authors:  Natalie Forbes; Alessia Pallaoro; Norbert O Reich; Joseph A Zasadzinski
Journal:  Part Part Syst Charact       Date:  2014-07-14       Impact factor: 3.310

Review 4.  When detergent meets bilayer: birth and coming of age of lipid bicelles.

Authors:  Ulrich H N Dürr; Ronald Soong; Ayyalusamy Ramamoorthy
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2013-01-23       Impact factor: 9.795

Review 5.  On the role of NMR spectroscopy for characterization of antimicrobial peptides.

Authors:  Fernando Porcelli; Ayyalusamy Ramamoorthy; George Barany; Gianluigi Veglia
Journal:  Methods Mol Biol       Date:  2013

6.  Phase separation behavior of mixed lipid systems at neutral and low pH: coarse-grained simulations with DMD/LIME.

Authors:  Emily M Curtis; Xingqing Xiao; Stavroula Sofou; Carol K Hall
Journal:  Langmuir       Date:  2015-01-15       Impact factor: 3.882

  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.