Literature DB >> 18565737

Phages across the biosphere: contrasts of viruses in soil and aquatic environments.

Sharath Srinivasiah1, Jaysheel Bhavsar, Kanika Thapar, Mark Liles, Tom Schoenfeld, K Eric Wommack.   

Abstract

Despite the predominance of aquatic environments on the planet Earth, microbial abundance and diversity within soil environments exceed that of the aquatic realm. Most of what we know of viral ecology within natural systems has come through investigations of aquatic environments. However, the 'aquatic-bias' in viral ecology is beginning to change as the cultivation-independent approaches, which revealed the extraordinary abundance and diversity of viruses within aquatic systems, are now being applied to soils. This review briefly summarizes recent investigations of viral abundance and diversity in soil environments.

Mesh:

Year:  2008        PMID: 18565737     DOI: 10.1016/j.resmic.2008.04.010

Source DB:  PubMed          Journal:  Res Microbiol        ISSN: 0923-2508            Impact factor:   3.992


  60 in total

1.  Snapshot of virus evolution in hypersaline environments from the characterization of a membrane-containing Salisaeta icosahedral phage 1.

Authors:  Antti P Aalto; David Bitto; Janne J Ravantti; Dennis H Bamford; Juha T Huiskonen; Hanna M Oksanen
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-16       Impact factor: 11.205

2.  Temporal dynamics and decay of putatively allochthonous and autochthonous viral genotypes in contrasting freshwater lakes.

Authors:  Ian Hewson; Jorge G Barbosa; Julia M Brown; Ryan P Donelan; James B Eaglesham; Erin M Eggleston; Brenna A LaBarre
Journal:  Appl Environ Microbiol       Date:  2012-07-06       Impact factor: 4.792

3.  Identification and genomic analysis of a novel member of Microviridae, IME-16, through high-throughput sequencing.

Authors:  Peng Shu; Azeem Mehmood Butt; Zhiqiang Mi; Wei Wang; Xiaoping An; Guangqian Pei; Zhiyi Zhang; Yong Huang; Xianglilan Zhang; Taoxing Shi; Yigang Tong
Journal:  Virol Sin       Date:  2015-08       Impact factor: 4.327

Review 4.  Diversity and Ecology of Viruses in Hyperarid Desert Soils.

Authors:  Olivier Zablocki; Evelien M Adriaenssens; Don Cowan
Journal:  Appl Environ Microbiol       Date:  2015-11-20       Impact factor: 4.792

5.  Phages in nature.

Authors:  Martha Rj Clokie; Andrew D Millard; Andrey V Letarov; Shaun Heaphy
Journal:  Bacteriophage       Date:  2011-01

6.  Distinct circular single-stranded DNA viruses exist in different soil types.

Authors:  Brian Reavy; Maud M Swanson; Peter J A Cock; Lorna Dawson; Thomas E Freitag; Brajesh K Singh; Lesley Torrance; Arcady R Mushegian; Michael Taliansky
Journal:  Appl Environ Microbiol       Date:  2015-04-03       Impact factor: 4.792

7.  Correlation between viral production and carbon mineralization under nitrate-reducing conditions in aquifer sediment.

Authors:  Donald Pan; Rachel Watson; Dake Wang; Zheng Huan Tan; Daniel D Snow; Karrie A Weber
Journal:  ISME J       Date:  2014-03-27       Impact factor: 10.302

8.  High-level diversity of tailed phages, eukaryote-associated viruses, and virophage-like elements in the metaviromes of antarctic soils.

Authors:  Olivier Zablocki; Lonnie van Zyl; Evelien M Adriaenssens; Enrico Rubagotti; Marla Tuffin; Stephen Craig Cary; Don Cowan
Journal:  Appl Environ Microbiol       Date:  2014-08-29       Impact factor: 4.792

9.  The single-stranded DNA genome of novel archaeal virus halorubrum pleomorphic virus 1 is enclosed in the envelope decorated with glycoprotein spikes.

Authors:  Maija K Pietilä; Simonas Laurinavicius; Jukka Sund; Elina Roine; Dennis H Bamford
Journal:  J Virol       Date:  2009-10-28       Impact factor: 5.103

10.  Lateral gene transfer of family A DNA polymerases between thermophilic viruses, aquificae, and apicomplexa.

Authors:  Thomas W Schoenfeld; Senthil K Murugapiran; Jeremy A Dodsworth; Sally Floyd; Michael Lodes; David A Mead; Brian P Hedlund
Journal:  Mol Biol Evol       Date:  2013-04-22       Impact factor: 16.240

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