Literature DB >> 21687533

Phages in nature.

Martha Rj Clokie1, Andrew D Millard, Andrey V Letarov, Shaun Heaphy.   

Abstract

Bacteriophages or phages are the most abundant organisms in the biosphere and they are a ubiquitous feature of prokaryotic existence. A bacteriophage is a virus which infects a bacterium. Archaea are also infected by viruses, whether these should be referred to as 'phages' is debatable, but they are included as such in the scope this article. Phages have been of interest to scientists as tools to understand fundamental molecular biology, as vectors of horizontal gene transfer and drivers of bacterial evolution, as sources of diagnostic and genetic tools and as novel therapeutic agents. Unraveling the biology of phages and their relationship with their hosts is key to understanding microbial systems and their exploitation. In this article we describe the roles of phages in different host systems and show how modeling, microscopy, isolation, genomic and metagenomic based approaches have come together to provide unparalleled insights into these small but vital constituents of the microbial world.

Entities:  

Year:  2011        PMID: 21687533      PMCID: PMC3109452          DOI: 10.4161/bact.1.1.14942

Source DB:  PubMed          Journal:  Bacteriophage        ISSN: 2159-7073


  126 in total

1.  A novel virus family, the Rudiviridae: Structure, virus-host interactions and genome variability of the sulfolobus viruses SIRV1 and SIRV2.

Authors:  D Prangishvili; H P Arnold; D Götz; U Ziese; I Holz; J K Kristjansson; W Zillig
Journal:  Genetics       Date:  1999-08       Impact factor: 4.562

Review 2.  [Reconstruction of possible paths of the origin and morphological evolution of bacteriophages].

Authors:  A V Letarov
Journal:  Genetika       Date:  1998-11

Review 3.  Bacteriophage resistance mechanisms.

Authors:  Simon J Labrie; Julie E Samson; Sylvain Moineau
Journal:  Nat Rev Microbiol       Date:  2010-03-29       Impact factor: 60.633

4.  SH1: A novel, spherical halovirus isolated from an Australian hypersaline lake.

Authors:  Kate Porter; Petra Kukkaro; Jaana K H Bamford; Carolyn Bath; Hanna M Kivelä; Mike L Dyall-Smith; Dennis H Bamford
Journal:  Virology       Date:  2005-04-25       Impact factor: 3.616

5.  Viral photosynthetic reaction center genes and transcripts in the marine environment.

Authors:  Itai Sharon; Shani Tzahor; Shannon Williamson; Michael Shmoish; Dikla Man-Aharonovich; Douglas B Rusch; Shibu Yooseph; Gil Zeidner; Susan S Golden; Shannon R Mackey; Noam Adir; Uri Weingart; David Horn; J Craig Venter; Yael Mandel-Gutfreund; Oded Béjà
Journal:  ISME J       Date:  2007-08-09       Impact factor: 10.302

Review 6.  Phages across the biosphere: contrasts of viruses in soil and aquatic environments.

Authors:  Sharath Srinivasiah; Jaysheel Bhavsar; Kanika Thapar; Mark Liles; Tom Schoenfeld; K Eric Wommack
Journal:  Res Microbiol       Date:  2008-05-08       Impact factor: 3.992

7.  Bacteriophages in rumen contents of sheep.

Authors:  N J Hoogenraad; F J Hirk; I Holmes; N F Millis
Journal:  J Gen Virol       Date:  1967-10       Impact factor: 3.891

8.  CRISPR associated diversity within a population of Sulfolobus islandicus.

Authors:  Nicole L Held; Alfa Herrera; Hinsby Cadillo-Quiroz; Rachel J Whitaker
Journal:  PLoS One       Date:  2010-09-28       Impact factor: 3.240

9.  The single-stranded DNA genome of novel archaeal virus halorubrum pleomorphic virus 1 is enclosed in the envelope decorated with glycoprotein spikes.

Authors:  Maija K Pietilä; Simonas Laurinavicius; Jukka Sund; Elina Roine; Dennis H Bamford
Journal:  J Virol       Date:  2009-10-28       Impact factor: 5.103

10.  Sequence analysis of an Archaeal virus isolated from a hypersaline lake in Inner Mongolia, China.

Authors:  Eulyn Pagaling; Richard D Haigh; William D Grant; Don A Cowan; Brian E Jones; Yanhe Ma; Antonio Ventosa; Shaun Heaphy
Journal:  BMC Genomics       Date:  2007-11-09       Impact factor: 3.969

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  266 in total

1.  Variation of resistance and infectivity between Pseudomonas fluorescens SBW25 and bacteriophage Φ2 and its therapeutic implications.

Authors:  Hanchen Chen; Guohua Chen
Journal:  Virol Sin       Date:  2015-02       Impact factor: 4.327

2.  Insertion sequences enrichment in extreme Red sea brine pool vent.

Authors:  Ali H A Elbehery; Ramy K Aziz; Rania Siam
Journal:  Extremophiles       Date:  2016-12-03       Impact factor: 2.395

Review 3.  Phage Therapy: a Step Forward in the Treatment of Pseudomonas aeruginosa Infections.

Authors:  Diana P Pires; Diana Vilas Boas; Sanna Sillankorva; Joana Azeredo
Journal:  J Virol       Date:  2015-05-13       Impact factor: 5.103

4.  Sublethal streptomycin concentrations and lytic bacteriophage together promote resistance evolution.

Authors:  Johannes Cairns; Lutz Becks; Matti Jalasvuori; Teppo Hiltunen
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2017-01-19       Impact factor: 6.237

5.  Homology modeling, substrate docking, and molecular simulation studies of mycobacteriophage Che12 lysin A.

Authors:  Shainaba A Saadhali; Sameer Hassan; Luke Elizabeth Hanna; Uma Devi Ranganathan; Vanaja Kumar
Journal:  J Mol Model       Date:  2016-07-13       Impact factor: 1.810

Review 6.  Genetically Engineered Phages: a Review of Advances over the Last Decade.

Authors:  Diana P Pires; Sara Cleto; Sanna Sillankorva; Joana Azeredo; Timothy K Lu
Journal:  Microbiol Mol Biol Rev       Date:  2016-06-01       Impact factor: 11.056

7.  Isolation and characterization of a Siphoviridae phage infecting Bacillus megaterium from a heavily trafficked holy site in Saudi Arabia.

Authors:  B A Othman; Ahmed Askora; Amel S M Abo-Senna
Journal:  Folia Microbiol (Praha)       Date:  2015-01-27       Impact factor: 2.099

8.  Modeling the infection dynamics of bacteriophages in enteric Escherichia coli: estimating the contribution of transduction to antimicrobial gene spread.

Authors:  Victoriya V Volkova; Zhao Lu; Thomas Besser; Yrjö T Gröhn
Journal:  Appl Environ Microbiol       Date:  2014-05-09       Impact factor: 4.792

Review 9.  Phage or foe: an insight into the impact of viral predation on microbial communities.

Authors:  Lucía Fernández; Ana Rodríguez; Pilar García
Journal:  ISME J       Date:  2018-01-25       Impact factor: 10.302

10.  Minimal requirements for inhibition of MraY by lysis protein E from bacteriophage ΦX174.

Authors:  Shiho Tanaka; William M Clemons
Journal:  Mol Microbiol       Date:  2012-07-13       Impact factor: 3.501

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