Literature DB >> 18537282

A shotgun proteomic method for the identification of membrane-embedded proteins and peptides.

Adele R Blackler1, Anna E Speers, Mark S Ladinsky, Christine C Wu.   

Abstract

Integral membrane proteins perform crucial cellular functions and are the targets for the majority of pharmaceutical agents. However, the hydrophobic nature of their membrane-embedded domains makes them difficult to work with. Here, we describe a shotgun proteomic method for the high-throughput analysis of the membrane-embedded transmembrane domains of integral membrane proteins which extends the depth of coverage of the membrane proteome.

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Year:  2008        PMID： 18537282      PMCID： PMC2765231          DOI： 10.1021/pr700795f

Source DB:  PubMed          Journal:  J Proteome Res        ISSN： 1535-3893            Impact factor:   4.466


  26 in total

1.  Probability-based validation of protein identifications using a modified SEQUEST algorithm.

Authors:  Michael J MacCoss; Christine C Wu; John R Yates
Journal:  Anal Chem       Date:  2002-11-01       Impact factor: 6.986

2.  A detergent- and cyanogen bromide-free method for integral membrane proteomics: application to Halobacterium purple membranes and the human epidermal membrane proteome.

Authors:  Josip Blonder; Thomas P Conrads; Li-Rong Yu; Atsushi Terunuma; George M Janini; Haleem J Issaq; Jonathan C Vogel; Timothy D Veenstra
Journal:  Proteomics       Date:  2004-01       Impact factor: 3.984

3.  A method for the comprehensive proteomic analysis of membrane proteins.

Authors:  Christine C Wu; Michael J MacCoss; Kathryn E Howell; John R Yates
Journal:  Nat Biotechnol       Date:  2003-04-14       Impact factor: 54.908

4.  Structural features of transmembrane helices.

Authors:  Peter Werner Hildebrand; Robert Preissner; Cornelius Frömmel
Journal:  FEBS Lett       Date:  2004-02-13       Impact factor: 4.124

5.  Molecular analysis of a human interferon-inducible gene family.

Authors:  A R Lewin; L E Reid; M McMahon; G R Stark; I M Kerr
Journal:  Eur J Biochem       Date:  1991-07-15

6.  Computer visualization of three-dimensional image data using IMOD.

Authors:  J R Kremer; D N Mastronarde; J R McIntosh
Journal:  J Struct Biol       Date:  1996 Jan-Feb       Impact factor: 2.867

7.  A simple method for displaying the hydropathic character of a protein.

Authors:  J Kyte; R F Doolittle
Journal:  J Mol Biol       Date:  1982-05-05       Impact factor: 5.469

8.  Sequence analysis of photoaffinity-labelled peptides derived by proteolysis of photosystem-2 reaction centres from thylakoid membranes treated with [14C]azidoatrazine.

Authors:  J P Whitelegge; P Jewess; M G Pickering; C Gerrish; P Camilleri; J R Bowyer
Journal:  Eur J Biochem       Date:  1992-08-01

Review 9.  Integral membrane protein biosynthesis: why topology is hard to predict.

Authors:  Carolyn M Ott; Vishwanath R Lingappa
Journal:  J Cell Sci       Date:  2002-05-15       Impact factor: 5.285

10.  Hepatic Golgi fractions resolved into membrane and content subfractions.

Authors:  K E Howell; G E Palade
Journal:  J Cell Biol       Date:  1982-03       Impact factor: 10.539
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  9 in total

Review 1.  Protein analysis by shotgun/bottom-up proteomics.

Authors:  Yaoyang Zhang; Bryan R Fonslow; Bing Shan; Moon-Chang Baek; John R Yates
Journal:  Chem Rev       Date:  2013-02-26       Impact factor: 60.622

2.  The Asia Oceania Human Proteome Organisation Membrane Proteomics Initiative. Preparation and characterisation of the carbonate-washed membrane standard.

Authors:  Lifeng Peng; Eugene A Kapp; David Fenyö; Min-Seok Kwon; Pu Jiang; Songfeng Wu; Ying Jiang; Marie-Isabel Aguilar; Nikhat Ahmed; Mark S Baker; Zongwei Cai; Yu-Ju Chen; Phan Van Chi; Maxey C M Chung; Fuchu He; Alice C L Len; Pao-Chi Liao; Kazuyuki Nakamura; Sai Ming Ngai; Young-Ki Paik; Tai-Long Pan; Terence C W Poon; Ghasem Hosseini Salekdeh; Richard J Simpson; Ravi Sirdeshmukh; Chantragan Srisomsap; Jisnuson Svasti; Yu-Chang Tyan; Florian S Dreyer; Danyl McLauchlan; Pisana Rawson; T William Jordan
Journal:  Proteomics       Date:  2010-11       Impact factor: 3.984

3.  The revolution and evolution of shotgun proteomics for large-scale proteome analysis.

Authors:  John R Yates
Journal:  J Am Chem Soc       Date:  2013-01-16       Impact factor: 15.419

4.  Mass spectrometry-based analysis of rat liver and hepatocellular carcinoma Morris hepatoma 7777 plasma membrane proteome.

Authors:  Lulu Cao; James G Clifton; Werner Reutter; Djuro Josic
Journal:  Anal Chem       Date:  2013-08-22       Impact factor: 6.986

5.  Comparative analysis of techniques to purify plasma membrane proteins.

Authors:  Michael P Weekes; Robin Antrobus; Jennie R Lill; Lidia M Duncan; Simon Hör; Paul J Lehner
Journal:  J Biomol Tech       Date:  2010-09

6.  Comparison of nanowire pellicles for plasma membrane enrichment: coating nanowires on cell.

Authors:  Sung-Kyoung Kim; Rebecca Rose; Waeowalee Choksawangkarn; Lauren Graham; Junkai Hu; Catherine Fenselau; Sang Bok Lee
Journal:  J Nanopart Res       Date:  2013-12-01       Impact factor: 2.253

Review 7.  Chromatographic benefits of elevated temperature for the proteomic analysis of membrane proteins.

Authors:  Adele R Blackler; Anna E Speers; Christine C Wu
Journal:  Proteomics       Date:  2008-10       Impact factor: 3.984

8.  Optimization of protein solubilization for the analysis of the CD14 human monocyte membrane proteome using LC-MS/MS.

Authors:  Xiaoying Ye; Donald J Johann; Ramin M Hakami; Zhen Xiao; Zhaojing Meng; Robert G Ulrich; Haleem J Issaq; Timothy D Veenstra; Josip Blonder
Journal:  J Proteomics       Date:  2009-08-24       Impact factor: 4.044

Review 9.  Integral membrane proteins and bilayer proteomics.

Authors:  Julian P Whitelegge
Journal:  Anal Chem       Date:  2013-02-19       Impact factor: 6.986
  9 in total

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