Literature DB >> 20486120

The Asia Oceania Human Proteome Organisation Membrane Proteomics Initiative. Preparation and characterisation of the carbonate-washed membrane standard.

Lifeng Peng1, Eugene A Kapp, David Fenyö, Min-Seok Kwon, Pu Jiang, Songfeng Wu, Ying Jiang, Marie-Isabel Aguilar, Nikhat Ahmed, Mark S Baker, Zongwei Cai, Yu-Ju Chen, Phan Van Chi, Maxey C M Chung, Fuchu He, Alice C L Len, Pao-Chi Liao, Kazuyuki Nakamura, Sai Ming Ngai, Young-Ki Paik, Tai-Long Pan, Terence C W Poon, Ghasem Hosseini Salekdeh, Richard J Simpson, Ravi Sirdeshmukh, Chantragan Srisomsap, Jisnuson Svasti, Yu-Chang Tyan, Florian S Dreyer, Danyl McLauchlan, Pisana Rawson, T William Jordan.   

Abstract

The Asia Oceania Human Proteome Organisation (AOHUPO) has embarked on a Membrane Proteomics Initiative with goals of systematic comparison of strategies for analysis of membrane proteomes and discovery of membrane proteins. This multilaboratory project is based on the analysis of a subcellular fraction from mouse liver that contains endoplasmic reticulum and other organelles. In this study, we present the strategy used for the preparation and initial characterization of the membrane sample, including validation that the carbonate-washing step enriches for integral and lipid-anchored membrane proteins. Analysis of 17 independent data sets from five types of proteomic workflows is in progress.
Copyright © 2010 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

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Year:  2010        PMID: 20486120      PMCID: PMC3891941          DOI: 10.1002/pmic.201000126

Source DB:  PubMed          Journal:  Proteomics        ISSN: 1615-9853            Impact factor:   3.984


  25 in total

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Journal:  Biochem J       Date:  1975-02       Impact factor: 3.857

2.  A method for the comprehensive proteomic analysis of membrane proteins.

Authors:  Christine C Wu; Michael J MacCoss; Kathryn E Howell; John R Yates
Journal:  Nat Biotechnol       Date:  2003-04-14       Impact factor: 54.908

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Authors:  Tim Beissbarth; Lavinia Hyde; Gordon K Smyth; Chris Job; Wee-Ming Boon; Seong-Seng Tan; Hamish S Scott; Terence P Speed
Journal:  Bioinformatics       Date:  2004-08-04       Impact factor: 6.937

4.  Comparison of human platelet membrane-cytoskeletal proteins with the plasma proteome: Towards understanding the platelet-plasma nexus.

Authors:  David W Greening; Kristen M Glenister; Eugene A Kapp; Robert L Moritz; Rosemary L Sparrow; Garry W Lynch; Richard J Simpson
Journal:  Proteomics Clin Appl       Date:  2007-12-17       Impact factor: 3.494

5.  Human liver proteome project: plan, progress, and perspectives.

Authors:  Fuchu He
Journal:  Mol Cell Proteomics       Date:  2005-08-23       Impact factor: 5.911

6.  Proteomics of mouse liver microsomes: performance of different protein separation workflows for LC-MS/MS.

Authors:  Victor G Zgoda; Sergei A Moshkovskii; Elena A Ponomarenko; Timofey V Andreewski; Arthur T Kopylov; Olga V Tikhonova; Stanislav A Melnik; Andrei V Lisitsa; Alexander I Archakov
Journal:  Proteomics       Date:  2009-08       Impact factor: 3.984

7.  The AOHUPO Membrane Proteomics Initiative, Fourth Workshop 22 June 2008, Cairns, Australia.

Authors:  Maxey Chung; Kazuyuki Nakamura; T William Jordan
Journal:  Proteomics       Date:  2008-10       Impact factor: 3.984

8.  Subcellular distribution of hepatic bile acid-conjugating enzymes.

Authors:  W C Lim; T W Jordan
Journal:  Biochem J       Date:  1981-09-01       Impact factor: 3.857

9.  Comprehensive and quantitative proteome profiling of the mouse liver and plasma.

Authors:  Keane K Y Lai; Deepak Kolippakkam; Laura Beretta
Journal:  Hepatology       Date:  2008-03       Impact factor: 17.425

10.  Isolation of intracellular membranes by means of sodium carbonate treatment: application to endoplasmic reticulum.

Authors:  Y Fujiki; A L Hubbard; S Fowler; P B Lazarow
Journal:  J Cell Biol       Date:  1982-04       Impact factor: 10.539

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  5 in total

1.  Improved recovery and identification of membrane proteins from rat hepatic cells using a centrifugal proteomic reactor.

Authors:  Hu Zhou; Fangjun Wang; Yuwei Wang; Zhibin Ning; Weimin Hou; Theodore G Wright; Meenakshi Sundaram; Shumei Zhong; Zemin Yao; Daniel Figeys
Journal:  Mol Cell Proteomics       Date:  2011-07-12       Impact factor: 5.911

2.  Two distinct populations of exosomes are released from LIM1863 colon carcinoma cell-derived organoids.

Authors:  Bow J Tauro; David W Greening; Rommel A Mathias; Suresh Mathivanan; Hong Ji; Richard J Simpson
Journal:  Mol Cell Proteomics       Date:  2012-12-10       Impact factor: 5.911

3.  Mass spectrometry-based analysis of rat liver and hepatocellular carcinoma Morris hepatoma 7777 plasma membrane proteome.

Authors:  Lulu Cao; James G Clifton; Werner Reutter; Djuro Josic
Journal:  Anal Chem       Date:  2013-08-22       Impact factor: 6.986

4.  Proteomic analysis of low- and high-grade human colon adenocarcinoma tissues and tissue-derived primary cell lines reveals unique biological functions of tumours and new protein biomarker candidates.

Authors:  Matthew J Munro; Susrutha K Wickremesekera; Swee T Tan; Lifeng Peng
Journal:  Clin Proteomics       Date:  2022-07-16       Impact factor: 5.000

5.  A survey of membrane proteins in human serum.

Authors:  Nguyen Tien Dung; Phan Van Chi
Journal:  Proteomics Insights       Date:  2012-04-03
  5 in total

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