Literature DB >> 18523007

Barrierless evolution of structure during the submillisecond refolding reaction of a small protein.

Kalyan K Sinha1, Jayant B Udgaonkar.   

Abstract

To determine whether a protein folding reaction can occur in the absence of a dominant barrier is crucial for understanding its complexity. Here direct ultrafast kinetic measurements have been used to study the initial submillisecond (sub-ms) folding reaction of the small protein barstar. The cooperativity of the initial folding reaction has been explored by using two probes: fluorescence resonance energy transfer, through which the contraction of two intramolecular distances is measured, and the binding of 8-anilino-1-naphthalene sulfonic acid, through which the formation of hydrophobic clusters is monitored. A fast chain contraction is shown to precede the formation of hydrophobic clusters, indicating that the sub-ms folding reaction is not cooperative. The observed rate constant of the sub-ms folding reaction monitored by 8-anilino-1-naphthalene sulfonic acid fluorescence has been found to be the same in stabilizing conditions (low urea concentrations), in which specific structure is formed, and in marginally stabilizing conditions (higher urea concentrations), where virtually no structure is formed in the product of the sub-ms folding reaction. The observation that the folding rate is independent of the folding conditions suggests that the initial folding reaction occurs in the absence of a dominant free energy barrier. These results provide kinetic evidence that the formation of specific structure need not be slowed down by any significant free energy barrier during the course of a very fast protein folding reaction.

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Year:  2008        PMID: 18523007      PMCID: PMC2430349          DOI: 10.1073/pnas.0803193105

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  56 in total

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Authors:  Stephen J Hagen
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Authors:  Victor Muñoz
Journal:  Annu Rev Biophys Biomol Struct       Date:  2007

6.  Dynamics of equilibrium structural fluctuations of apomyoglobin measured by fluorescence correlation spectroscopy.

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Journal:  Proc Natl Acad Sci U S A       Date:  2007-06-07       Impact factor: 11.205

7.  Dissecting the non-specific and specific components of the initial folding reaction of barstar by multi-site FRET measurements.

Authors:  Kalyan K Sinha; Jayant B Udgaonkar
Journal:  J Mol Biol       Date:  2007-04-27       Impact factor: 5.469

8.  Protein folding kinetics: barrier effects in chemical and thermal denaturation experiments.

Authors:  Athi N Naganathan; Urmi Doshi; Victor Muñoz
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9.  Comparison of C40/82A and P27A C40/82A barstar mutants using 19F NMR.

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Journal:  Biochemistry       Date:  2007-03-20       Impact factor: 3.162

10.  Distinguishing between cooperative and unimodal downhill protein folding.

Authors:  Fang Huang; Satoshi Sato; Timothy D Sharpe; Liming Ying; Alan R Fersht
Journal:  Proc Natl Acad Sci U S A       Date:  2007-01-02       Impact factor: 11.205

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  9 in total

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Journal:  Cell Mol Life Sci       Date:  2012-01-25       Impact factor: 9.261

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3.  Quantitative assessments of the distinct contributions of polypeptide backbone amides versus side chain groups to chain expansion via chemical denaturation.

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4.  Ruggedness in the folding landscape of protein L.

Authors:  Steven A Waldauer; Olgica Bakajin; Terry Ball; Yujie Chen; Stephen J Decamp; Michaela Kopka; Marcus Jäger; Vijay R Singh; William J Wedemeyer; Shimon Weiss; Shuhuai Yao; Lisa J Lapidus
Journal:  HFSP J       Date:  2008-11-14

5.  Unfolding of a small protein proceeds via dry and wet globules and a solvated transition state.

Authors:  Saswata Sankar Sarkar; Jayant B Udgaonkar; Guruswamy Krishnamoorthy
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6.  Continuous dissolution of structure during the unfolding of a small protein.

Authors:  Santosh Kumar Jha; Deepak Dhar; Guruswamy Krishnamoorthy; Jayant B Udgaonkar
Journal:  Proc Natl Acad Sci U S A       Date:  2009-06-24       Impact factor: 11.205

7.  Direct evidence for a dry molten globule intermediate during the unfolding of a small protein.

Authors:  Santosh Kumar Jha; Jayant B Udgaonkar
Journal:  Proc Natl Acad Sci U S A       Date:  2009-07-15       Impact factor: 11.205

Review 8.  How cooperative are protein folding and unfolding transitions?

Authors:  Pooja Malhotra; Jayant B Udgaonkar
Journal:  Protein Sci       Date:  2016-09-13       Impact factor: 6.725

9.  Assessing Site-Specific Enhancements Imparted by Hyperpolarized Water in Folded and Unfolded Proteins by 2D HMQC NMR.

Authors:  Or Szekely; Gregory Lars Olsen; Mihajlo Novakovic; Rina Rosenzweig; Lucio Frydman
Journal:  J Am Chem Soc       Date:  2020-05-12       Impact factor: 15.419

  9 in total

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