Literature DB >> 17223539

Ultrafast and downhill protein folding.

R Brian Dyer1.   

Abstract

Ultrafast folding proteins have served an important role in benchmarking molecular dynamics simulations and testing protein folding theories. These proteins are simple enough and fold fast enough that realistic simulations are possible, which facilitates the direct comparison of absolute folding rates and folding mechanisms with those observed experimentally. Such comparisons have achieved remarkable success, but have also revealed the shortcomings that remain in experiment, theory and simulation alike. Some ultrafast folding proteins may fold without encountering an activation barrier (downhill folding), allowing the exploration of the molecular timescale of folding and the roughness of the energy landscape. The biological significance of ultrafast folding remains uncertain, but its practical significance is crucial to progress in understanding how proteins fold.

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Year:  2007        PMID: 17223539     DOI: 10.1016/j.sbi.2007.01.001

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  24 in total

Review 1.  An expanding arsenal of experimental methods yields an explosion of insights into protein folding mechanisms.

Authors:  Alice I Bartlett; Sheena E Radford
Journal:  Nat Struct Mol Biol       Date:  2009-06       Impact factor: 15.369

2.  Barrierless evolution of structure during the submillisecond refolding reaction of a small protein.

Authors:  Kalyan K Sinha; Jayant B Udgaonkar
Journal:  Proc Natl Acad Sci U S A       Date:  2008-06-03       Impact factor: 11.205

3.  Making connections between ultrafast protein folding kinetics and molecular dynamics simulations.

Authors:  Troy Cellmer; Marco Buscaglia; Eric R Henry; James Hofrichter; William A Eaton
Journal:  Proc Natl Acad Sci U S A       Date:  2011-03-24       Impact factor: 11.205

4.  Dual time-resolved temperature-jump fluorescence and infrared spectroscopy for the study of fast protein dynamics.

Authors:  Caitlin M Davis; Michael J Reddish; R Brian Dyer
Journal:  Spectrochim Acta A Mol Biomol Spectrosc       Date:  2017-02-02       Impact factor: 4.098

5.  Heterogeneity in the Folding of Villin Headpiece Subdomain HP36.

Authors:  Sureshbabu Nagarajan; Shifeng Xiao; Daniel P Raleigh; R Brian Dyer
Journal:  J Phys Chem B       Date:  2018-08-28       Impact factor: 2.991

6.  Raising the speed limit for β-hairpin formation.

Authors:  Caitlin M Davis; Shifeng Xiao; Daniel P Raleigh; R Brian Dyer
Journal:  J Am Chem Soc       Date:  2012-08-21       Impact factor: 15.419

Review 7.  Reconstructing folding energy landscapes by single-molecule force spectroscopy.

Authors:  Michael T Woodside; Steven M Block
Journal:  Annu Rev Biophys       Date:  2014       Impact factor: 12.981

8.  Differential ordering of the protein backbone and side chains during protein folding revealed by site-specific recombinant infrared probes.

Authors:  Sureshbabu Nagarajan; Humeyra Taskent-Sezgin; Dzmitry Parul; Isaac Carrico; Daniel P Raleigh; R Brian Dyer
Journal:  J Am Chem Soc       Date:  2011-11-28       Impact factor: 15.419

9.  Dynamics of an ultrafast folding subdomain in the context of a larger protein fold.

Authors:  Caitlin M Davis; R Brian Dyer
Journal:  J Am Chem Soc       Date:  2013-12-13       Impact factor: 15.419

10.  Mutational effects on the folding dynamics of a minimized hairpin.

Authors:  Michele Scian; Irene Shu; Katherine A Olsen; Khalil Hassam; Niels H Andersen
Journal:  Biochemistry       Date:  2013-04-05       Impact factor: 3.162

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