Literature DB >> 17291180

Conformational dynamics and ensembles in protein folding.

Victor Muñoz1.   

Abstract

Recent experimental developments are changing the ways we interpret experimental data in protein folding, leading to a closer connection with theory and an improved understanding of some long-standing questions in the field. We now have a basic roadmap of the types of polypeptide motions and timescales that are relevant to the various folding stages. The folding barriers estimated with a variety of independent methods are consistently small, indicating that several fast-folding proteins are near or within the downhill folding regime. Finally, the structural and statistical analysis of global downhill folding is promising to open a new avenue of research in which folding mechanisms and the networks of noncovalent interactions that stabilize native structures are directly resolved in equilibrium experiments of nonmutated proteins.

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Year:  2007        PMID: 17291180     DOI: 10.1146/annurev.biophys.36.040306.132608

Source DB:  PubMed          Journal:  Annu Rev Biophys Biomol Struct        ISSN: 1056-8700


  35 in total

1.  Equilibrium unfolding of the PDZ domain of β2-syntrophin.

Authors:  Gabriela María Torchio; Mario Roberto Ermácora; Mauricio Pablo Sica
Journal:  Biophys J       Date:  2012-06-19       Impact factor: 4.033

2.  Low folding cooperativity of HP35 revealed by single-molecule force spectroscopy and molecular dynamics simulation.

Authors:  Chunmei Lv; Cheng Tan; Meng Qin; Dawei Zou; Yi Cao; Wei Wang
Journal:  Biophys J       Date:  2012-04-18       Impact factor: 4.033

3.  The effect of electrostatics on the marginal cooperativity of an ultrafast folding protein.

Authors:  Tanay M Desai; Michele Cerminara; Mourad Sadqi; Victor Muñoz
Journal:  J Biol Chem       Date:  2010-08-22       Impact factor: 5.157

4.  Theory of site-specific DNA-protein interactions in the presence of conformational fluctuations of DNA binding domains.

Authors:  R Murugan
Journal:  Biophys J       Date:  2010-07-21       Impact factor: 4.033

5.  A photoprotection strategy for microsecond-resolution single-molecule fluorescence spectroscopy.

Authors:  Luis A Campos; Jianwei Liu; Xiang Wang; Ravishankar Ramanathan; Douglas S English; Victor Muñoz
Journal:  Nat Methods       Date:  2011-01-09       Impact factor: 28.547

6.  A natural missing link between activated and downhill protein folding scenarios.

Authors:  Feng Liu; Caroline Maynard; Gregory Scott; Artem Melnykov; Kathleen B Hall; Martin Gruebele
Journal:  Phys Chem Chem Phys       Date:  2010-02-11       Impact factor: 3.676

Review 7.  Protein folding studied by single-molecule FRET.

Authors:  Benjamin Schuler; William A Eaton
Journal:  Curr Opin Struct Biol       Date:  2008-01-24       Impact factor: 6.809

8.  Exploiting the downhill folding regime via experiment.

Authors:  Victor Muñoz; Mourad Sadqi; Athi N Naganathan; David de Sancho
Journal:  HFSP J       Date:  2008-10-13

9.  Early stages for Parkinson's development: alpha-synuclein misfolding and aggregation.

Authors:  Junping Yu; Yuri L Lyubchenko
Journal:  J Neuroimmune Pharmacol       Date:  2008-07-17       Impact factor: 4.147

10.  Barrierless evolution of structure during the submillisecond refolding reaction of a small protein.

Authors:  Kalyan K Sinha; Jayant B Udgaonkar
Journal:  Proc Natl Acad Sci U S A       Date:  2008-06-03       Impact factor: 11.205

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