Literature DB >> 19617531

Direct evidence for a dry molten globule intermediate during the unfolding of a small protein.

Santosh Kumar Jha1, Jayant B Udgaonkar.   

Abstract

Little is known about how proteins begin to unfold. In particular, how and when water molecules penetrate into the protein interior during unfolding, thereby enabling the dissolution of specific structure, is poorly understood. The hypothesis that the native state expands initially into a dry molten globule, in which tight packing interactions are broken, but whose hydrophobic core has not expanded sufficiently to be able to absorb water molecules, has very little experimental support. Here, we report our analysis of the earliest observable events during the unfolding of single chain monellin (MNEI), a small plant protein. Far- and near-UV circular dichroism measurements of GdnHCl-induced unfolding indicate that a molten globule intermediate forms initially, before the major slow unfolding reaction commences. Steady-state fluorescence resonance energy transfer measurements show that the C-terminal end of the single helix of MNEI initially moves rapidly away from the single tryptophan residue that is close to the N-terminal end of the helix. The average end-to-end distance of the protein also expands during unfolding to the molten globule intermediate. At this time, water has yet to penetrate the protein core, according to the evidence from intrinsic tryptophan fluorescence and 8-anilino-1-naphthalenesulfonic acid fluorescence-monitored kinetic unfolding measurements. Our results therefore provide direct evidence for a dry molten globule intermediate at the initial stage of unfolding. Our results further suggest that the structural transition between the native and dry molten globule states could be an all-or-none transition, whereas further swelling of the globule appears to occur gradually.

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Year:  2009        PMID: 19617531      PMCID: PMC2718347          DOI: 10.1073/pnas.0905744106

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  37 in total

1.  Three-state denaturation of alpha-lactalbumin by guanidine hydrochloride.

Authors:  K Kuwajima; K Nitta; M Yoneyama; S Sugai
Journal:  J Mol Biol       Date:  1976-09-15       Impact factor: 5.469

Review 2.  Dominant forces in protein folding.

Authors:  K A Dill
Journal:  Biochemistry       Date:  1990-08-07       Impact factor: 3.162

3.  Theory of cooperative transitions in protein molecules. II. Phase diagram for a protein molecule in solution.

Authors:  A V Finkelstein; E I Shakhnovich
Journal:  Biopolymers       Date:  1989-10       Impact factor: 2.505

4.  Theory of cooperative transitions in protein molecules. I. Why denaturation of globular protein is a first-order phase transition.

Authors:  E I Shakhnovich; A V Finkelstein
Journal:  Biopolymers       Date:  1989-10       Impact factor: 2.505

Review 5.  Stability of protein structure and hydrophobic interaction.

Authors:  P L Privalov; S J Gill
Journal:  Adv Protein Chem       Date:  1988

Review 6.  Protein denaturation. C. Theoretical models for the mechanism of denaturation.

Authors:  C Tanford
Journal:  Adv Protein Chem       Date:  1970

7.  Direct NMR evidence for an intermediate preceding the rate-limiting step in the unfolding of ribonuclease A.

Authors:  T Kiefhaber; A M Labhardt; R L Baldwin
Journal:  Nature       Date:  1995-06-08       Impact factor: 49.962

8.  Contribution of hydration to protein folding thermodynamics. II. The entropy and Gibbs energy of hydration.

Authors:  P L Privalov; G I Makhatadze
Journal:  J Mol Biol       Date:  1993-07-20       Impact factor: 5.469

9.  Kinetics of hydrogen bond breakage in the process of unfolding of ribonuclease A measured by pulsed hydrogen exchange.

Authors:  T Kiefhaber; R L Baldwin
Journal:  Proc Natl Acad Sci U S A       Date:  1995-03-28       Impact factor: 11.205

10.  Stopped-flow NMR spectroscopy: real-time unfolding studies of 6-19F-tryptophan-labeled Escherichia coli dihydrofolate reductase.

Authors:  S D Hoeltzli; C Frieden
Journal:  Proc Natl Acad Sci U S A       Date:  1995-09-26       Impact factor: 11.205

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  34 in total

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Journal:  Protein Sci       Date:  2012-03-16       Impact factor: 6.725

2.  Reducing the dimensionality of the protein-folding search problem.

Authors:  George D Chellapa; George D Rose
Journal:  Protein Sci       Date:  2012-07-06       Impact factor: 6.725

3.  Role of protein stabilizers on the conformation of the unfolded state of cytochrome c and its early folding kinetics: investigation at single molecular resolution.

Authors:  Shubhasis Haldar; Samaresh Mitra; Krishnananda Chattopadhyay
Journal:  J Biol Chem       Date:  2010-06-10       Impact factor: 5.157

4.  Unfolding of a small protein proceeds via dry and wet globules and a solvated transition state.

Authors:  Saswata Sankar Sarkar; Jayant B Udgaonkar; Guruswamy Krishnamoorthy
Journal:  Biophys J       Date:  2013-11-19       Impact factor: 4.033

5.  Structural and kinetic mapping of side-chain exposure onto the protein energy landscape.

Authors:  Rachel Bernstein; Kierstin L Schmidt; Pehr B Harbury; Susan Marqusee
Journal:  Proc Natl Acad Sci U S A       Date:  2011-06-13       Impact factor: 11.205

6.  An unlocking/relocking barrier in conformational fluctuations of villin headpiece subdomain.

Authors:  Andreas Reiner; Peter Henklein; Thomas Kiefhaber
Journal:  Proc Natl Acad Sci U S A       Date:  2010-03-01       Impact factor: 11.205

7.  A hypothesis to reconcile the physical and chemical unfolding of proteins.

Authors:  Guilherme A P de Oliveira; Jerson L Silva
Journal:  Proc Natl Acad Sci U S A       Date:  2015-05-11       Impact factor: 11.205

8.  Kinetic evidence for a two-stage mechanism of protein denaturation by guanidinium chloride.

Authors:  Santosh Kumar Jha; Susan Marqusee
Journal:  Proc Natl Acad Sci U S A       Date:  2014-03-17       Impact factor: 11.205

Review 9.  How cooperative are protein folding and unfolding transitions?

Authors:  Pooja Malhotra; Jayant B Udgaonkar
Journal:  Protein Sci       Date:  2016-09-13       Impact factor: 6.725

10.  Dissecting the contributions of β-hairpin tyrosine pairs to the folding and stability of long-lived human γD-crystallins.

Authors:  Zaixing Yang; Zhen Xia; Tien Huynh; Jonathan A King; Ruhong Zhou
Journal:  Nanoscale       Date:  2014       Impact factor: 7.790

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