Literature DB >> 18521077

The art and design of genetic screens: RNA interference.

Michael Boutros1, Julie Ahringer.   

Abstract

The remarkable gene knockdown technique of RNAi has opened exciting new avenues for genetic screens in model organisms and human cells. Here we describe the current state of the art for RNAi screening, and stress the importance of well-designed assays and of analytical approaches for large-scale screening experiments, from high-throughput screens using simplified homogenous assays to microscopy and whole-animal experiments. Like classical genetic screens in the past, the success of large-scale RNAi surveys depends on a careful development of phenotypic assays and their interpretation in a relevant biological context.

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Year:  2008        PMID: 18521077     DOI: 10.1038/nrg2364

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  181 in total

1.  "Vacuum-assisted staining": a simple and efficient method for screening in Drosophila.

Authors:  Nicola Berns; Innokenty Woichansky; Nadine Kraft; Ulrike Hüsken; Matthias Carl; Veit Riechmann
Journal:  Dev Genes Evol       Date:  2012-02-26       Impact factor: 0.900

2.  RNAi screening to identify postembryonic phenotypes in C. elegans.

Authors:  Katherine K Beifuss; Tina L Gumienny
Journal:  J Vis Exp       Date:  2012-02-13       Impact factor: 1.355

3.  Diverse epigenetic strategies interact to control epidermal differentiation.

Authors:  Klaas W Mulder; Xin Wang; Carles Escriu; Yoko Ito; Roland F Schwarz; Jesse Gillis; Gábor Sirokmány; Giacomo Donati; Santiago Uribe-Lewis; Paul Pavlidis; Adele Murrell; Florian Markowetz; Fiona M Watt
Journal:  Nat Cell Biol       Date:  2012-06-24       Impact factor: 28.824

Review 4.  In vivo RNAi: today and tomorrow.

Authors:  Norbert Perrimon; Jian-Quan Ni; Lizabeth Perkins
Journal:  Cold Spring Harb Perspect Biol       Date:  2010-06-09       Impact factor: 10.005

Review 5.  Systems biology in immunology: a computational modeling perspective.

Authors:  Ronald N Germain; Martin Meier-Schellersheim; Aleksandra Nita-Lazar; Iain D C Fraser
Journal:  Annu Rev Immunol       Date:  2011       Impact factor: 28.527

Review 6.  RNAi screening: new approaches, understandings, and organisms.

Authors:  Stephanie E Mohr; Norbert Perrimon
Journal:  Wiley Interdiscip Rev RNA       Date:  2011-09-22       Impact factor: 9.957

7.  A piggyBac transposon-based genome-wide library of insertionally mutated Blm-deficient murine ES cells.

Authors:  Wei Wang; Allan Bradley; Yue Huang
Journal:  Genome Res       Date:  2009-02-20       Impact factor: 9.043

8.  Efficient isolation of ion beam-induced mutants for homoeologous loci in common wheat and comparison of the contributions of Glu-1 loci to gluten functionality.

Authors:  Yushuang Yang; Shiming Li; Kunpu Zhang; Zhenying Dong; Yiwen Li; Xueli An; Jing Chen; Qiufang Chen; Zhen Jiao; Xin Liu; Huanju Qin; Daowen Wang
Journal:  Theor Appl Genet       Date:  2013-11-09       Impact factor: 5.699

Review 9.  Navigating the network: signaling cross-talk in hematopoietic cells.

Authors:  Iain D C Fraser; Ronald N Germain
Journal:  Nat Immunol       Date:  2009-03-19       Impact factor: 25.606

Review 10.  RNAi screens to identify components of gene networks that modulate aging in Caenorhabditis elegans.

Authors:  Zhuoyu Ni; Siu Sylvia Lee
Journal:  Brief Funct Genomics       Date:  2010-01-06       Impact factor: 4.241

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