Literature DB >> 19295628

Navigating the network: signaling cross-talk in hematopoietic cells.

Iain D C Fraser1, Ronald N Germain.   

Abstract

Recent studies in hematopoietic cells have led to a growing appreciation of the diverse modes of molecular and functional cross-talk between canonical signaling pathways. However, these intersections represent only the tip of the iceberg. Emerging global analytical methods are providing an even richer and more complete picture of the many components that measurably interact in a network manner to produce cellular responses. Here we highlight the pieces in this Focus, emphasize the limitations of the present canonical pathway paradigm, and discuss the value of a systems biology approach using more global, quantitative experimental design and data analysis strategies. Lastly, we urge caution about overly facile interpretation of genome- and proteome-level studies.

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Year:  2009        PMID: 19295628      PMCID: PMC2776706          DOI: 10.1038/ni.1711

Source DB:  PubMed          Journal:  Nat Immunol        ISSN: 1529-2908            Impact factor:   25.606


  56 in total

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2.  A single lentiviral vector platform for microRNA-based conditional RNA interference and coordinated transgene expression.

Authors:  Kum-Joo Shin; Estelle A Wall; Joelle R Zavzavadjian; Leah A Santat; Jamie Liu; Jong-Ik Hwang; Robert Rebres; Tamara Roach; William Seaman; Melvin I Simon; Iain D C Fraser
Journal:  Proc Natl Acad Sci U S A       Date:  2006-08-31       Impact factor: 11.205

3.  Observations on the physiological action of extracts of the supra-renal bodies.

Authors:  J N Langley
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4.  Integration of biological networks and gene expression data using Cytoscape.

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Journal:  Nat Protoc       Date:  2007       Impact factor: 13.491

Review 5.  Integration of cytokine and heterologous receptor signaling pathways.

Authors:  Jelena S Bezbradica; Ruslan Medzhitov
Journal:  Nat Immunol       Date:  2009-03-19       Impact factor: 25.606

Review 6.  Lipid second messengers.

Authors:  M Liscovitch; L C Cantley
Journal:  Cell       Date:  1994-05-06       Impact factor: 41.582

7.  Global, in vivo, and site-specific phosphorylation dynamics in signaling networks.

Authors:  Jesper V Olsen; Blagoy Blagoev; Florian Gnad; Boris Macek; Chanchal Kumar; Peter Mortensen; Matthias Mann
Journal:  Cell       Date:  2006-11-03       Impact factor: 41.582

8.  A novel genetic system to detect protein-protein interactions.

Authors:  S Fields; O Song
Journal:  Nature       Date:  1989-07-20       Impact factor: 49.962

9.  Kinase requirements in human cells: I. Comparing kinase requirements across various cell types.

Authors:  Dorre A Grueneberg; Sebastien Degot; Joseph Pearlberg; Wenliang Li; Joan E Davies; Amy Baldwin; Wilson Endege; John Doench; Jacqueline Sawyer; Yanhui Hu; Frederick Boyce; Jun Xian; Karl Munger; Ed Harlow
Journal:  Proc Natl Acad Sci U S A       Date:  2008-10-23       Impact factor: 11.205

10.  Unraveling protein networks with power graph analysis.

Authors:  Loïc Royer; Matthias Reimann; Bill Andreopoulos; Michael Schroeder
Journal:  PLoS Comput Biol       Date:  2008-07-11       Impact factor: 4.475

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  29 in total

1.  Systematic discovery of TLR signaling components delineates viral-sensing circuits.

Authors:  Nicolas Chevrier; Philipp Mertins; Maxim N Artyomov; Alex K Shalek; Matteo Iannacone; Mark F Ciaccio; Irit Gat-Viks; Elena Tonti; Marciela M DeGrace; Karl R Clauser; Manuel Garber; Thomas M Eisenhaure; Nir Yosef; Jacob Robinson; Amy Sutton; Mette S Andersen; David E Root; Ulrich von Andrian; Richard B Jones; Hongkun Park; Steven A Carr; Aviv Regev; Ido Amit; Nir Hacohen
Journal:  Cell       Date:  2011-11-11       Impact factor: 41.582

Review 2.  Systems biology in immunology: a computational modeling perspective.

Authors:  Ronald N Germain; Martin Meier-Schellersheim; Aleksandra Nita-Lazar; Iain D C Fraser
Journal:  Annu Rev Immunol       Date:  2011       Impact factor: 28.527

3.  Activation or tolerance of natural killer cells is modulated by ligand quality in a nonmonotonic manner.

Authors:  Jayajit Das
Journal:  Biophys J       Date:  2010-10-06       Impact factor: 4.033

Review 4.  Mechanisms and functions for the duration of intercellular contacts made by lymphocytes.

Authors:  Daniel M Davis
Journal:  Nat Rev Immunol       Date:  2009-07-17       Impact factor: 53.106

Review 5.  Structure and dynamics of molecular networks: a novel paradigm of drug discovery: a comprehensive review.

Authors:  Peter Csermely; Tamás Korcsmáros; Huba J M Kiss; Gábor London; Ruth Nussinov
Journal:  Pharmacol Ther       Date:  2013-02-04       Impact factor: 12.310

Review 6.  How the TCR balances sensitivity and specificity for the recognition of self and pathogens.

Authors:  Gerald P Morris; Paul M Allen
Journal:  Nat Immunol       Date:  2012-01-19       Impact factor: 25.606

7.  Maintaining system homeostasis: the third law of Newtonian immunology.

Authors:  Ronald N Germain
Journal:  Nat Immunol       Date:  2012-10       Impact factor: 25.606

8.  Single-cell mass cytometry of differential immune and drug responses across a human hematopoietic continuum.

Authors:  Sean C Bendall; Erin F Simonds; Peng Qiu; El-ad D Amir; Peter O Krutzik; Rachel Finck; Robert V Bruggner; Rachel Melamed; Angelica Trejo; Olga I Ornatsky; Robert S Balderas; Sylvia K Plevritis; Karen Sachs; Dana Pe'er; Scott D Tanner; Garry P Nolan
Journal:  Science       Date:  2011-05-06       Impact factor: 47.728

9.  Drosophila Ras/MAPK signalling regulates innate immune responses in immune and intestinal stem cells.

Authors:  Anan Ragab; Tina Buechling; Viola Gesellchen; Kerstin Spirohn; Anna-Lisa Boettcher; Michael Boutros
Journal:  EMBO J       Date:  2011-02-04       Impact factor: 11.598

10.  Network crosstalk dynamically changes during neutrophil polarization.

Authors:  Chin-Jen Ku; Yanqin Wang; Orion D Weiner; Steven J Altschuler; Lani F Wu
Journal:  Cell       Date:  2012-05-25       Impact factor: 41.582

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