Literature DB >> 18517226

Cholesterol packing around lipids with saturated and unsaturated chains: a simulation study.

Sagar A Pandit1, See-Wing Chiu, Eric Jakobsson, Ananth Grama, H L Scott.   

Abstract

The fundamental role of cholesterol in the regulation of eukaryotic membrane structure is well-established. However the manner in which atomic level interactions between cholesterol and lipids, with varying degrees of chain unsaturation and polar groups, affect the overall structure and organization of the bilayer is only beginning to be understood. In this paper we describe a series of Molecular Dynamics simulations designed to provide new insights into lipid-cholesterol interactions as a function of chain unsaturation. We have run simulations of varying concentrations of cholesterol in dipalmitoyl phosphatidylcholine (DPPC), palmitoyl-oleyol phosphatidylcholine (POPC), and dioleyol phosphatidylcholine (DOPC) bilayers. Structural analysis of the simulations reveals both atomistic and systemic details of the interactions and are presented here. In particular, we find that the minimum partial molecular area of cholesterol occurs in POPC-Chol mixtures implying the most favorable packing. Physically, this appears to be related to the fact that the two faces of the cholesterol molecule are different from each other and that the steric cross section of cholesterol molecules drops sharply near the small chain tails.

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Year:  2008        PMID: 18517226      PMCID: PMC2739443          DOI: 10.1021/la8004135

Source DB:  PubMed          Journal:  Langmuir        ISSN: 0743-7463            Impact factor:   3.882


  42 in total

1.  Gradual change or phase transition: characterizing fluid lipid-cholesterol membranes on the basis of thermal volume changes.

Authors:  Heiko Heerklotz; Alekos Tsamaloukas
Journal:  Biophys J       Date:  2006-04-21       Impact factor: 4.033

2.  Ceramide-platform formation and -induced biophysical changes in a fluid phospholipid membrane.

Authors:  Liana Silva; Rodrigo F M de Almeida; Alexander Fedorov; António P A Matos; Manuel Prieto
Journal:  Mol Membr Biol       Date:  2006 Mar-Apr       Impact factor: 2.857

3.  Areas of molecules in membranes consisting of mixtures.

Authors:  Olle Edholm; John F Nagle
Journal:  Biophys J       Date:  2005-07-01       Impact factor: 4.033

Review 4.  Functional rafts in cell membranes.

Authors:  K Simons; E Ikonen
Journal:  Nature       Date:  1997-06-05       Impact factor: 49.962

5.  Molecular dynamics simulations of a fluid bilayer of dipalmitoylphosphatidylcholine at full hydration, constant pressure, and constant temperature.

Authors:  O Berger; O Edholm; F Jähnig
Journal:  Biophys J       Date:  1997-05       Impact factor: 4.033

6.  Structure of fully hydrated fluid phase lipid bilayers with monounsaturated chains.

Authors:  Norbert Kucerka; Stephanie Tristram-Nagle; John F Nagle
Journal:  J Membr Biol       Date:  2006-04-08       Impact factor: 1.843

7.  Structure of dipalmitoylphosphatidylcholine/cholesterol bilayer at low and high cholesterol concentrations: molecular dynamics simulation.

Authors:  A M Smondyrev; M L Berkowitz
Journal:  Biophys J       Date:  1999-10       Impact factor: 4.033

8.  Thermodynamic comparison of the interactions of cholesterol with unsaturated phospholipid and sphingomyelins.

Authors:  Alekos Tsamaloukas; Halina Szadkowska; Heiko Heerklotz
Journal:  Biophys J       Date:  2006-03-31       Impact factor: 4.033

9.  Molecular order and dynamics of phosphatidylcholine bilayer membranes in the presence of cholesterol, ergosterol and lanosterol: a comparative study using 2H-, 13C- and 31P-NMR spectroscopy.

Authors:  J A Urbina; S Pekerar; H B Le; J Patterson; B Montez; E Oldfield
Journal:  Biochim Biophys Acta       Date:  1995-09-13

10.  Constant-pressure molecular dynamics investigation of cholesterol effects in a dipalmitoylphosphatidylcholine bilayer.

Authors:  K Tu; M L Klein; D J Tobias
Journal:  Biophys J       Date:  1998-11       Impact factor: 4.033

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  29 in total

1.  Quantitative experimental assessment of macromolecular crowding effects at membrane surfaces.

Authors:  Rania Leventis; John R Silvius
Journal:  Biophys J       Date:  2010-10-06       Impact factor: 4.033

2.  Self-consistent mean-field model for palmitoyloleoylphosphatidylcholine-palmitoyl sphingomyelin-cholesterol lipid bilayers.

Authors:  Paul W Tumaneng; Sagar A Pandit; Guijun Zhao; H L Scott
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2011-03-31

3.  A structurally relevant coarse-grained model for cholesterol.

Authors:  K R Hadley; C McCabe
Journal:  Biophys J       Date:  2010-11-03       Impact factor: 4.033

4.  The structural basis of cholesterol accessibility in membranes.

Authors:  Brett N Olsen; Agata A Bielska; Tiffany Lee; Michael D Daily; Douglas F Covey; Paul H Schlesinger; Nathan A Baker; Daniel S Ory
Journal:  Biophys J       Date:  2013-10-15       Impact factor: 4.033

5.  Membrane Binding of HIV-1 Matrix Protein: Dependence on Bilayer Composition and Protein Lipidation.

Authors:  Marilia Barros; Frank Heinrich; Siddhartha A K Datta; Alan Rein; Ioannis Karageorgos; Hirsh Nanda; Mathias Lösche
Journal:  J Virol       Date:  2016-04-14       Impact factor: 5.103

6.  All n-3 PUFA are not the same: MD simulations reveal differences in membrane organization for EPA, DHA and DPA.

Authors:  Xiaoling Leng; Jacob J Kinnun; Andres T Cavazos; Samuel W Canner; Saame Raza Shaikh; Scott E Feller; Stephen R Wassall
Journal:  Biochim Biophys Acta Biomembr       Date:  2018-01-03       Impact factor: 3.747

7.  Lateral organization of complex lipid mixtures from multiscale modeling.

Authors:  Paul W Tumaneng; Sagar A Pandit; Guijun Zhao; H L Scott
Journal:  J Chem Phys       Date:  2010-02-14       Impact factor: 3.488

8.  A Simulation Study of the Self-Assembly of Coarse-Grained Skin Lipids.

Authors:  K R Hadley; C McCabe
Journal:  Soft Matter       Date:  2012-03-14       Impact factor: 3.679

9.  Derivatives of rhodamine 19 as mild mitochondria-targeted cationic uncouplers.

Authors:  Yuri N Antonenko; Armine V Avetisyan; Dmitry A Cherepanov; Dmitry A Knorre; Galina A Korshunova; Olga V Markova; Silvia M Ojovan; Irina V Perevoshchikova; Antonina V Pustovidko; Tatyana I Rokitskaya; Inna I Severina; Ruben A Simonyan; Ekaterina A Smirnova; Alexander A Sobko; Natalia V Sumbatyan; Fedor F Severin; Vladimir P Skulachev
Journal:  J Biol Chem       Date:  2011-03-30       Impact factor: 5.157

Review 10.  Multiscale simulations of heterogeneous model membranes.

Authors:  Sagar A Pandit; H Larry Scott
Journal:  Biochim Biophys Acta       Date:  2008-09-23
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