Literature DB >> 10512828

Structure of dipalmitoylphosphatidylcholine/cholesterol bilayer at low and high cholesterol concentrations: molecular dynamics simulation.

A M Smondyrev1, M L Berkowitz.   

Abstract

By using molecular dynamics simulation technique we studied the changes occurring in membranes constructed of dipalmitoylphosphatidylcholine (DPPC) and cholesterol at 8:1 and 1:1 ratios. We tested two different initial arrangements of cholesterol molecules for a 1:1 ratio. The main difference between two initial structures is the average number of nearest-neighbor DPPC molecules around the cholesterol molecule. Our simulations were performed at constant temperature (T = 50 degrees C) and pressure (P = 0 atm). Durations of the runs were 2 ns. The structure of the DPPC/cholesterol membrane was characterized by calculating the order parameter profiles for the hydrocarbon chains, atom distributions, average number of gauche defects, and membrane dipole potentials. We found that adding cholesterol to membranes results in a condensing effect: the average area of membrane becomes smaller, hydrocarbon chains of DPPC have higher order, and the probability of gauche defects in DPPC tails is lower. Our results are in agreement with the data available from experiments.

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Year:  1999        PMID: 10512828      PMCID: PMC1300489          DOI: 10.1016/S0006-3495(99)77049-9

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  31 in total

1.  Protein-lipid interactions. A nuclear magnetic resonance study of sarcoplasmic reticulum Ca2,Mg2+-ATPase, lipophilin, and proteolipid apoprotein-lecithin systems and a comparison with the effects of cholesterol.

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Journal:  Biochemistry       Date:  1979-12-25       Impact factor: 3.162

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Journal:  J Biol Chem       Date:  1972-06-10       Impact factor: 5.157

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Authors:  E Oldfield; M Meadows; D Rice; R Jacobs
Journal:  Biochemistry       Date:  1978-07-11       Impact factor: 3.162

Review 4.  Preferred conformation and molecular packing of phosphatidylethanolamine and phosphatidylcholine.

Authors:  H Hauser; I Pascher; R H Pearson; S Sundell
Journal:  Biochim Biophys Acta       Date:  1981-06-16

5.  Molecular dynamics simulation of DPPC bilayer in DMSO.

Authors:  A M Smondyrev; M L Berkowitz
Journal:  Biophys J       Date:  1999-05       Impact factor: 4.033

6.  Cholesterol modifies the short-range repulsive interactions between phosphatidylcholine membranes.

Authors:  T J McIntosh; A D Magid; S A Simon
Journal:  Biochemistry       Date:  1989-01-10       Impact factor: 3.162

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Journal:  Biochemistry       Date:  1986-10-21       Impact factor: 3.162

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Authors:  R H Pearson; I Pascher
Journal:  Nature       Date:  1979-10-11       Impact factor: 49.962

9.  Relationships between lipid membrane area, hydrophobic thickness, and acyl-chain orientational order. The effects of cholesterol.

Authors:  J H Ipsen; O G Mouritsen; M Bloom
Journal:  Biophys J       Date:  1990-03       Impact factor: 4.033

10.  Phase equilibria of cholesterol/dipalmitoylphosphatidylcholine mixtures: 2H nuclear magnetic resonance and differential scanning calorimetry.

Authors:  M R Vist; J H Davis
Journal:  Biochemistry       Date:  1990-01-16       Impact factor: 3.162

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  81 in total

1.  Molecular dynamics simulation of the structure of dimyristoylphosphatidylcholine bilayers with cholesterol, ergosterol, and lanosterol.

Authors:  A M Smondyrev; M L Berkowitz
Journal:  Biophys J       Date:  2001-04       Impact factor: 4.033

2.  Molecular dynamics simulations of wild-type and mutant forms of the Mycobacterium tuberculosis MscL channel.

Authors:  D E Elmore; D A Dougherty
Journal:  Biophys J       Date:  2001-09       Impact factor: 4.033

3.  Asymmetric requirement for cholesterol in receptor-bearing but not envelope-bearing membranes for fusion mediated by ecotropic murine leukemia virus.

Authors:  Xiongbin Lu; Ying Xiong; Jonathan Silver
Journal:  J Virol       Date:  2002-07       Impact factor: 5.103

4.  Lessons of slicing membranes: interplay of packing, free area, and lateral diffusion in phospholipid/cholesterol bilayers.

Authors:  Emma Falck; Michael Patra; Mikko Karttunen; Marja T Hyvönen; Ilpo Vattulainen
Journal:  Biophys J       Date:  2004-08       Impact factor: 4.033

5.  Effect of membrane characteristics on phase separation and domain formation in cholesterol-lipid mixtures.

Authors:  Veena Pata; Nily Dan
Journal:  Biophys J       Date:  2004-11-12       Impact factor: 4.033

6.  Simulation of nanoparticle permeation through a lipid membrane.

Authors:  Steven L Fiedler; Angela Violi
Journal:  Biophys J       Date:  2010-07-07       Impact factor: 4.033

7.  The effect of neutral helper lipids on the structure of cationic lipid monolayers.

Authors:  A P Dabkowska; D J Barlow; A V Hughes; R A Campbell; P J Quinn; M J Lawrence
Journal:  J R Soc Interface       Date:  2011-08-10       Impact factor: 4.118

8.  Interactions of liquid crystal-forming molecules with phospholipid bilayers studied by molecular dynamics simulations.

Authors:  Evelina B Kim; Nathan Lockwood; Manan Chopra; Orlando Guzmán; Nicholas L Abbott; Juan J de Pablo
Journal:  Biophys J       Date:  2005-08-19       Impact factor: 4.033

9.  Exploration of molecular interactions in cholesterol superlattices: effect of multibody interactions.

Authors:  Juyang Huang
Journal:  Biophys J       Date:  2002-08       Impact factor: 4.033

10.  Interfacing molecular dynamics and macro-scale simulations for lipid bilayer vesicles.

Authors:  Gary Ayton; Alexander M Smondyrev; Scott G Bardenhagen; Patrick McMurtry; Gregory A Voth
Journal:  Biophys J       Date:  2002-08       Impact factor: 4.033

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