Literature DB >> 18483777

Computational insights into the O2-evolving complex of photosystem II.

Eduardo M Sproviero1, James P McEvoy, José A Gascón, Gary W Brudvig, Victor S Batista.   

Abstract

Mechanistic investigations of the water-splitting reaction of the oxygen-evolving complex (OEC) of photosystem II (PSII) are fundamentally informed by structural studies. Many physical techniques have provided important insights into the OEC structure and function, including X-ray diffraction (XRD) and extended X-ray absorption fine structure (EXAFS) spectroscopy as well as mass spectrometry (MS), electron paramagnetic resonance (EPR) spectroscopy, and Fourier transform infrared spectroscopy applied in conjunction with mutagenesis studies. However, experimental studies have yet to yield consensus as to the exact configuration of the catalytic metal cluster and its ligation scheme. Computational modeling studies, including density functional (DFT) theory combined with quantum mechanics/molecular mechanics (QM/MM) hybrid methods for explicitly including the influence of the surrounding protein, have proposed chemically satisfactory models of the fully ligated OEC within PSII that are maximally consistent with experimental results. The inorganic core of these models is similar to the crystallographic model upon which they were based, but comprises important modifications due to structural refinement, hydration, and proteinaceous ligation which improve agreement with a wide range of experimental data. The computational models are useful for rationalizing spectroscopic and crystallographic results and for building a complete structure-based mechanism of water-splitting in PSII as described by the intermediate oxidation states of the OEC. This review summarizes these recent advances in QM/MM modeling of PSII within the context of recent experimental studies.

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Year:  2008        PMID: 18483777      PMCID: PMC2728911          DOI: 10.1007/s11120-008-9307-0

Source DB:  PubMed          Journal:  Photosynth Res        ISSN: 0166-8595            Impact factor:   3.573


  139 in total

1.  Stoichiometry of proton release from the catalytic center in photosynthetic water oxidation. Reexamination by a glass electrode study at ph 5.5-7.2.

Authors:  E Schlodder; H T Witt
Journal:  J Biol Chem       Date:  1999-10-22       Impact factor: 5.157

2.  Two-state reactivity as a new concept in organometallic chemistry.

Authors:  D Schröder; S Shaik; H Schwarz
Journal:  Acc Chem Res       Date:  2000-03       Impact factor: 22.384

3.  Dual-mode EPR study of new signals from the S3-state of oxygen-evolving complex in photosystem II.

Authors:  T Matsukawa; H Mino; D Yoneda; A Kawamori
Journal:  Biochemistry       Date:  1999-03-30       Impact factor: 3.162

Review 4.  Pulsed and parallel-polarization EPR characterization of the photosystem II oxygen-evolving complex.

Authors:  R D Britt; J M Peloquin; K A Campbell
Journal:  Annu Rev Biophys Biomol Struct       Date:  2000

5.  Competitive binding of acetate and chloride in photosystem II.

Authors:  H Kühne; V A Szalai; G W Brudvig
Journal:  Biochemistry       Date:  1999-05-18       Impact factor: 3.162

6.  Histidine 332 of the D1 polypeptide modulates the magnetic and redox properties of the manganese cluster and tyrosine Y(Z) in photosystem II.

Authors:  R J Debus; K A Campbell; J M Peloquin; D P Pham; R D Britt
Journal:  Biochemistry       Date:  2000-01-18       Impact factor: 3.162

7.  Role of D1-His190 in the proton-coupled oxidation of tyrosine YZ in manganese-depleted photosystem II.

Authors:  A M Hays; I R Vassiliev; J H Golbeck; R J Debus
Journal:  Biochemistry       Date:  1999-09-14       Impact factor: 3.162

8.  Evidence for impaired hydrogen-bonding of tyrosine YZ in calcium-depleted photosystem II

Authors: 
Journal:  Biochim Biophys Acta       Date:  1999-04-21

Review 9.  X-ray spectroscopy-based structure of the Mn cluster and mechanism of photosynthetic oxygen evolution.

Authors:  J H Robblee; R M Cinco; V K Yachandra
Journal:  Biochim Biophys Acta       Date:  2001-01-05

10.  The affinities for the two substrate water binding sites in the O(2) evolving complex of photosystem II vary independently during S-state turnover.

Authors:  W Hillier; T Wydrzynski
Journal:  Biochemistry       Date:  2000-04-18       Impact factor: 3.162

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  9 in total

1.  Computational analysis of photosynthetic systems.

Authors:  M R Gunner
Journal:  Photosynth Res       Date:  2008-07-09       Impact factor: 3.573

Review 2.  Molecular mechanisms for generating transmembrane proton gradients.

Authors:  M R Gunner; Muhamed Amin; Xuyu Zhu; Jianxun Lu
Journal:  Biochim Biophys Acta       Date:  2013-03-16

3.  Electrostatic effects on proton coupled electron transfer in oxomanganese complexes inspired by the oxygen-evolving complex of photosystem II.

Authors:  Muhamed Amin; Leslie Vogt; Serguei Vassiliev; Ivan Rivalta; Mohammad M Sultan; Doug Bruce; Gary W Brudvig; Victor S Batista; M R Gunner
Journal:  J Phys Chem B       Date:  2013-05-15       Impact factor: 2.991

Review 4.  The MOD-QM/MM Method: Applications to Studies of Photosystem II and DNA G-Quadruplexes.

Authors:  M Askerka; J Ho; E R Batista; J A Gascón; V S Batista
Journal:  Methods Enzymol       Date:  2016-07-15       Impact factor: 1.600

5.  Evidence from FTIR difference spectroscopy of an extensive network of hydrogen bonds near the oxygen-evolving Mn(4)Ca cluster of photosystem II involving D1-Glu65, D2-Glu312, and D1-Glu329.

Authors:  Rachel J Service; Warwick Hillier; Richard J Debus
Journal:  Biochemistry       Date:  2010-08-10       Impact factor: 3.162

Review 6.  Non-heme manganese catalase--the 'other' catalase.

Authors:  James W Whittaker
Journal:  Arch Biochem Biophys       Date:  2011-12-16       Impact factor: 4.013

7.  Participation of glutamate-354 of the CP43 polypeptide in the ligation of manganese and the binding of substrate water in photosystem II.

Authors:  Rachel J Service; Junko Yano; Iain McConnell; Hong Jin Hwang; Dimitri Niks; Russ Hille; Tom Wydrzynski; Robert L Burnap; Warwick Hillier; Richard J Debus
Journal:  Biochemistry       Date:  2010-12-08       Impact factor: 3.162

Review 8.  Density functional theory.

Authors:  Maylis Orio; Dimitrios A Pantazis; Frank Neese
Journal:  Photosynth Res       Date:  2009 Nov-Dec       Impact factor: 3.573

9.  Taking snapshots of photosynthetic water oxidation using femtosecond X-ray diffraction and spectroscopy.

Authors:  Jan Kern; Rosalie Tran; Roberto Alonso-Mori; Sergey Koroidov; Nathaniel Echols; Johan Hattne; Mohamed Ibrahim; Sheraz Gul; Hartawan Laksmono; Raymond G Sierra; Richard J Gildea; Guangye Han; Julia Hellmich; Benedikt Lassalle-Kaiser; Ruchira Chatterjee; Aaron S Brewster; Claudiu A Stan; Carina Glöckner; Alyssa Lampe; Dörte DiFiore; Despina Milathianaki; Alan R Fry; M Marvin Seibert; Jason E Koglin; Erik Gallo; Jens Uhlig; Dimosthenis Sokaras; Tsu-Chien Weng; Petrus H Zwart; David E Skinner; Michael J Bogan; Marc Messerschmidt; Pieter Glatzel; Garth J Williams; Sébastien Boutet; Paul D Adams; Athina Zouni; Johannes Messinger; Nicholas K Sauter; Uwe Bergmann; Junko Yano; Vittal K Yachandra
Journal:  Nat Commun       Date:  2014-07-09       Impact factor: 14.919

  9 in total

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