Literature DB >> 18452574

A comparative method for studying adaptation to a randomly evolving environment.

Thomas F Hansen1, Jason Pienaar, Steven Hecht Orzack.   

Abstract

Most phylogenetic comparative methods used for testing adaptive hypotheses make evolutionary assumptions that are not compatible with evolution toward an optimal state. As a consequence they do not correct for maladaptation. The "evolutionary regression" that is returned is more shallow than the optimal relationship between the trait and environment. We show how both evolutionary and optimal regressions, as well as phylogenetic inertia, can be estimated jointly by a comparative method built around an Ornstein-Uhlenbeck model of adaptive evolution. The method considers a single trait adapting to an optimum that is influenced by one or more continuous, randomly changing predictor variables.

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Year:  2008        PMID: 18452574     DOI: 10.1111/j.1558-5646.2008.00412.x

Source DB:  PubMed          Journal:  Evolution        ISSN: 0014-3820            Impact factor:   3.694


  66 in total

1.  Is sociality required for the evolution of communicative complexity? Evidence weighed against alternative hypotheses in diverse taxonomic groups.

Authors:  Terry J Ord; Joan Garcia-Porta
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2012-07-05       Impact factor: 6.237

2.  The evolutionary convergence of avian lifestyles and their constrained coevolution with species' ecological niche.

Authors:  Paola Laiolo; Javier Seoane; Juan Carlos Illera; Giulia Bastianelli; Luis María Carrascal; José Ramón Obeso
Journal:  Proc Biol Sci       Date:  2015-12-22       Impact factor: 5.349

3.  Comparing 3D Genome Organization in Multiple Species Using Phylo-HMRF.

Authors:  Yang Yang; Yang Zhang; Bing Ren; Jesse R Dixon; Jian Ma
Journal:  Cell Syst       Date:  2019-06-26       Impact factor: 10.304

4.  Modeling gene expression evolution with an extended Ornstein-Uhlenbeck process accounting for within-species variation.

Authors:  Rori V Rohlfs; Patrick Harrigan; Rasmus Nielsen
Journal:  Mol Biol Evol       Date:  2013-10-10       Impact factor: 16.240

5.  Evidence for adaptive radiation from a phylogenetic study of plant defenses.

Authors:  Anurag A Agrawal; Mark Fishbein; Rayko Halitschke; Amy P Hastings; Daniel L Rabosky; Sergio Rasmann
Journal:  Proc Natl Acad Sci U S A       Date:  2009-09-10       Impact factor: 11.205

Review 6.  Controlling for non-independence in comparative analysis of patterns across populations within species.

Authors:  Graham N Stone; Sean Nee; Joseph Felsenstein
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2011-05-12       Impact factor: 6.237

7.  Phylogenetic signals and ecotoxicological responses: potential implications for aquatic biomonitoring.

Authors:  Melissa E Carew; Adam D Miller; Ary A Hoffmann
Journal:  Ecotoxicology       Date:  2011-03-02       Impact factor: 2.823

8.  The million-year wait for macroevolutionary bursts.

Authors:  Josef C Uyeda; Thomas F Hansen; Stevan J Arnold; Jason Pienaar
Journal:  Proc Natl Acad Sci U S A       Date:  2011-08-23       Impact factor: 11.205

9.  Simple versus complex models of trait evolution and stasis as a response to environmental change.

Authors:  Gene Hunt; Melanie J Hopkins; Scott Lidgard
Journal:  Proc Natl Acad Sci U S A       Date:  2015-04-21       Impact factor: 11.205

10.  Femoral morphology of sciuromorph rodents in light of scaling and locomotor ecology.

Authors:  Jan Wölfer; Eli Amson; Patrick Arnold; Léo Botton-Divet; Anne-Claire Fabre; Anneke H van Heteren; John A Nyakatura
Journal:  J Anat       Date:  2019-04-07       Impact factor: 2.610

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