Literature DB >> 18451804

Biological function in a non-native partially folded state of a protein.

Francesco Bemporad1, Joerg Gsponer, Harri I Hopearuoho, Georgia Plakoutsi, Gianmarco Stati, Massimo Stefani, Niccolò Taddei, Michele Vendruscolo, Fabrizio Chiti.   

Abstract

As structural flexibility is known to be required for enzyme catalysis and pattern recognition and a significant fraction of eukaryotic proteins appear to be unfolded or contain unstructured regions, biological activity of conformational states distinct from fully folded structures could be more common than previously thought. By applying a procedure that allows the recovery of enzymatic activity to be monitored in real time, we show that a non-native state populated transiently during folding of the acylphosphatase from Sulfolobus solfataricus is enzymatically active. The structural characterization of this partially folded state reveals that enzymatic activity is possible even if the catalytic site is structurally heterogeneous, whereas the remainder of the structure acts as a scaffold. These results extend the spectrum of biological functions carried out in the absence of a folded state to include enzyme catalysis.

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Year:  2008        PMID: 18451804      PMCID: PMC2396399          DOI: 10.1038/emboj.2008.82

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  34 in total

1.  Enzyme dynamics during catalysis.

Authors:  Elan Zohar Eisenmesser; Daryl A Bosco; Mikael Akke; Dorothee Kern
Journal:  Science       Date:  2002-02-22       Impact factor: 47.728

Review 2.  How enzymes work: analysis by modern rate theory and computer simulations.

Authors:  Mireia Garcia-Viloca; Jiali Gao; Martin Karplus; Donald G Truhlar
Journal:  Science       Date:  2004-01-09       Impact factor: 47.728

3.  An enzymatic molten globule: efficient coupling of folding and catalysis.

Authors:  Katherina Vamvaca; Beat Vögeli; Peter Kast; Konstantin Pervushin; Donald Hilvert
Journal:  Proc Natl Acad Sci U S A       Date:  2004-08-20       Impact factor: 11.205

4.  Formation of the folding nucleus of an SH3 domain investigated by loosely coupled molecular dynamics simulations.

Authors:  G Settanni; J Gsponer; A Caflisch
Journal:  Biophys J       Date:  2004-03       Impact factor: 4.033

5.  Structure and dynamics of a molten globular enzyme.

Authors:  Konstantin Pervushin; Katherina Vamvaca; Beat Vögeli; Donald Hilvert
Journal:  Nat Struct Mol Biol       Date:  2007-11-11       Impact factor: 15.369

Review 6.  A perspective on enzyme catalysis.

Authors:  Stephen J Benkovic; Sharon Hammes-Schiffer
Journal:  Science       Date:  2003-08-29       Impact factor: 47.728

7.  Aromatic acyl phosphates as substrates of acyl phosphatase.

Authors:  G Ramponi; C Treves; A A Guerritore
Journal:  Arch Biochem Biophys       Date:  1966-07       Impact factor: 4.013

Review 8.  Intrinsically disordered protein.

Authors:  A K Dunker; J D Lawson; C J Brown; R M Williams; P Romero; J S Oh; C J Oldfield; A M Campen; C M Ratliff; K W Hipps; J Ausio; M S Nissen; R Reeves; C Kang; C R Kissinger; R W Bailey; M D Griswold; W Chiu; E C Garner; Z Obradovic
Journal:  J Mol Graph Model       Date:  2001       Impact factor: 2.518

9.  Studying the folding process of the acylphosphatase from Sulfolobus solfataricus. A comparative analysis with other proteins from the same superfamily.

Authors:  Francesco Bemporad; Cristina Capanni; Martino Calamai; Maria Luisa Tutino; Massimo Stefani; Fabrizio Chiti
Journal:  Biochemistry       Date:  2004-07-20       Impact factor: 3.162

10.  Three-dimensional structural characterization of a novel Drosophila melanogaster acylphosphatase.

Authors:  Simone Zuccotti; Camillo Rosano; Matteo Ramazzotti; Donatella Degl'Innocenti; Massimo Stefani; Giampaolo Manao; Martino Bolognesi
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2004-05-21
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  9 in total

1.  Increased phospholipase A2 activity with phosphorylation of peroxiredoxin 6 requires a conformational change in the protein.

Authors:  Hamidur Rahaman; Suiping Zhou; Chandra Dodia; Sheldon I Feinstein; Shaohui Huang; David Speicher; Aron B Fisher
Journal:  Biochemistry       Date:  2012-06-29       Impact factor: 3.162

2.  Ligand binding to a high-energy partially unfolded protein.

Authors:  Joseph R Kasper; Chiwook Park
Journal:  Protein Sci       Date:  2014-12-05       Impact factor: 6.725

3.  Structural and kinetic mapping of side-chain exposure onto the protein energy landscape.

Authors:  Rachel Bernstein; Kierstin L Schmidt; Pehr B Harbury; Susan Marqusee
Journal:  Proc Natl Acad Sci U S A       Date:  2011-06-13       Impact factor: 11.205

Review 4.  Context-dependent resistance to proteolysis of intrinsically disordered proteins.

Authors:  Marcin J Suskiewicz; Joel L Sussman; Israel Silman; Yosef Shaul
Journal:  Protein Sci       Date:  2011-06-08       Impact factor: 6.725

5.  Direct Conversion of an Enzyme from Native-like to Amyloid-like Aggregates within Inclusion Bodies.

Authors:  Francesco Elia; Francesca Cantini; Fabrizio Chiti; Christopher Martin Dobson; Francesco Bemporad
Journal:  Biophys J       Date:  2017-06-20       Impact factor: 4.033

Review 6.  Peroxiredoxin 6 in the repair of peroxidized cell membranes and cell signaling.

Authors:  Aron B Fisher
Journal:  Arch Biochem Biophys       Date:  2016-12-06       Impact factor: 4.013

7.  Structure, orientation, and dynamics of the C-terminal hexapeptide of LRAP determined using solid-state NMR.

Authors:  Wendy J Shaw; Kim Ferris
Journal:  J Phys Chem B       Date:  2008-12-25       Impact factor: 2.991

Review 8.  The Molten Globule State of a Globular Protein in a Cell Is More or Less Frequent Case Rather than an Exception.

Authors:  Valentina E Bychkova; Dmitry A Dolgikh; Vitalii A Balobanov; Alexei V Finkelstein
Journal:  Molecules       Date:  2022-07-07       Impact factor: 4.927

Review 9.  Conditional disorder in chaperone action.

Authors:  James C A Bardwell; Ursula Jakob
Journal:  Trends Biochem Sci       Date:  2012-09-24       Impact factor: 13.807

  9 in total

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