Literature DB >> 17994104

Structure and dynamics of a molten globular enzyme.

Konstantin Pervushin1, Katherina Vamvaca, Beat Vögeli, Donald Hilvert.   

Abstract

Although protein dynamics has been recognized as a potentially important contributor to enzyme catalysis, structural disorder is generally considered to reduce catalytic efficiency. This widely held assumption has recently been challenged by the finding that an engineered chorismate mutase combines high catalytic activity with the properties of a molten globule, a loosely packed and highly dynamic conformational ensemble. Taking advantage of the ordering observed upon ligand binding, we have now used NMR spectroscopy to characterize this enzyme in complex with a transition-state analog. The complex adopts a helix-bundle structure, as designed, but retains unprecedented flexibility on the millisecond timescale across its entire length. Moreover, pre-steady-state kinetics data show that binding occurs by an induced-fit mechanism on the same timescale as the enzymatic reaction, linking global conformational plasticity with efficient catalysis.

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Year:  2007        PMID: 17994104     DOI: 10.1038/nsmb1325

Source DB:  PubMed          Journal:  Nat Struct Mol Biol        ISSN: 1545-9985            Impact factor:   15.369


  42 in total

1.  Increased phospholipase A2 activity with phosphorylation of peroxiredoxin 6 requires a conformational change in the protein.

Authors:  Hamidur Rahaman; Suiping Zhou; Chandra Dodia; Sheldon I Feinstein; Shaohui Huang; David Speicher; Aron B Fisher
Journal:  Biochemistry       Date:  2012-06-29       Impact factor: 3.162

2.  Design, selection, and characterization of a split chorismate mutase.

Authors:  Manuel M Müller; Hajo Kries; Eva Csuhai; Peter Kast; Donald Hilvert
Journal:  Protein Sci       Date:  2010-05       Impact factor: 6.725

3.  Impact of oxidation on protein therapeutics: conformational dynamics of intact and oxidized acid-β-glucocerebrosidase at near-physiological pH.

Authors:  Cedric E Bobst; John J Thomas; Paul A Salinas; Philip Savickas; Igor A Kaltashov
Journal:  Protein Sci       Date:  2010-12       Impact factor: 6.725

4.  Conformational dynamics control ubiquitin-deubiquitinase interactions and influence in vivo signaling.

Authors:  Aaron H Phillips; Yingnan Zhang; Christian N Cunningham; Lijuan Zhou; William F Forrest; Peter S Liu; Micah Steffek; James Lee; Christine Tam; Elizabeth Helgason; Jeremy M Murray; Donald S Kirkpatrick; Wayne J Fairbrother; Jacob E Corn
Journal:  Proc Natl Acad Sci U S A       Date:  2013-06-25       Impact factor: 11.205

5.  Proteins with weakly funneled energy landscapes challenge the classical structure-function paradigm.

Authors:  Garegin A Papoian
Journal:  Proc Natl Acad Sci U S A       Date:  2008-09-17       Impact factor: 11.205

6.  On the relationship between folding and chemical landscapes in enzyme catalysis.

Authors:  Maite Roca; Benjamin Messer; Donald Hilvert; Arieh Warshel
Journal:  Proc Natl Acad Sci U S A       Date:  2008-09-08       Impact factor: 11.205

7.  Biological function in a non-native partially folded state of a protein.

Authors:  Francesco Bemporad; Joerg Gsponer; Harri I Hopearuoho; Georgia Plakoutsi; Gianmarco Stati; Massimo Stefani; Niccolò Taddei; Michele Vendruscolo; Fabrizio Chiti
Journal:  EMBO J       Date:  2008-05-01       Impact factor: 11.598

8.  Functional Class I and II Amino Acid-activating Enzymes Can Be Coded by Opposite Strands of the Same Gene.

Authors:  Luis Martinez-Rodriguez; Ozgün Erdogan; Mariel Jimenez-Rodriguez; Katiria Gonzalez-Rivera; Tishan Williams; Li Li; Violetta Weinreb; Martha Collier; Srinivas Niranj Chandrasekaran; Xavier Ambroggio; Brian Kuhlman; Charles W Carter
Journal:  J Biol Chem       Date:  2015-06-18       Impact factor: 5.157

9.  Interactions between PTB RRMs induce slow motions and increase RNA binding affinity.

Authors:  Caroline M Maynard; Kathleen B Hall
Journal:  J Mol Biol       Date:  2010-01-18       Impact factor: 5.469

10.  Structure and inhibition of the SARS coronavirus envelope protein ion channel.

Authors:  Konstantin Pervushin; Edward Tan; Krupakar Parthasarathy; Xin Lin; Feng Li Jiang; Dejie Yu; Ardcharaporn Vararattanavech; Tuck Wah Soong; Ding Xiang Liu; Jaume Torres
Journal:  PLoS Pathog       Date:  2009-07-10       Impact factor: 6.823

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